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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g072570.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G48380.1 Solyc04g072570.2.1 AT1G71830.1 19616764
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400070694 Potato cytosol 29.4 90.57
PGSC0003DMT400070666 Potato plastid 62.94 88.2
PGSC0003DMT400070667 Potato cytosol 27.72 81.9
Solyc12g096720.1.1 Tomato cytosol 13.17 60.56
Solyc06g082920.2.1 Tomato plasma membrane 44.56 47.47
TraesCS3D01G395600.1 Wheat endoplasmic reticulum, vacuole 14.7 44.04
GSMUA_Achr9P08150_001 Banana cytosol, nucleus, plastid 25.73 41.9
Zm00001d039672_P001 Maize plasma membrane 15.62 39.84
KXG33866 Sorghum cytosol 14.85 39.43
Zm00001d007277_P001 Maize plasma membrane 35.38 39.35
Solyc12g096710.1.1 Tomato plasma membrane 48.39 39.16
CDX69430 Canola extracellular 14.24 38.91
TraesCS3A01G401300.1 Wheat cytosol 14.24 38.75
EES09539 Sorghum plasma membrane 35.53 38.41
CDY16992 Canola cytosol, plasma membrane, plastid 11.79 38.31
TraesCS3D01G395400.1 Wheat extracellular, golgi, plasma membrane 14.24 37.96
TraesCS4D01G084000.1 Wheat plasma membrane 35.07 37.79
TraesCS4B01G086300.1 Wheat plasma membrane 35.07 37.79
TraesCS3D01G395900.1 Wheat extracellular, golgi, plasma membrane 14.55 37.55
TraesCS4A01G229800.1 Wheat plasma membrane 34.76 37.46
CDY38095 Canola plasma membrane 15.16 37.36
HORVU4Hr1G014760.3 Barley plasma membrane 34.61 37.29
HORVU1Hr1G064780.1 Barley plasma membrane 34.46 37.25
EES19530 Sorghum plasma membrane 34.46 37.13
TraesCS1B01G269900.1 Wheat plasma membrane 34.3 37.02
CDY38092 Canola plasma membrane 15.16 36.94
CDX85492 Canola plasma membrane 15.16 36.94
TraesCS3D01G396100.1 Wheat plasma membrane 15.01 36.84
TraesCS3B01G434000.1 Wheat plasma membrane 14.7 36.78
VIT_05s0094g01290.t01 Wine grape mitochondrion 7.2 36.72
TraesCS1A01G259600.1 Wheat plasma membrane 34.0 36.69
TraesCS3B01G434100.1 Wheat plasma membrane 15.16 36.67
TraesCS3A01G400800.1 Wheat extracellular 14.85 36.47
CDX85334 Canola plasma membrane 34.76 36.44
Os01t0891601-01 Rice extracellular, golgi, plasma membrane 14.4 36.43
TraesCS1D01G259400.1 Wheat plasma membrane 33.69 36.42
TraesCS3B01G433700.1 Wheat plasma membrane 14.7 36.36
TraesCS3B01G434200.1 Wheat plasma membrane 15.16 36.26
CDY48749 Canola plasma membrane 34.46 36.12
Bra020705.1-P Field mustard plasma membrane 30.47 36.05
Solyc11g016930.1.1 Tomato extracellular, nucleus, plasma membrane 10.87 36.04
TraesCS3D01G395100.1 Wheat extracellular, plasma membrane 14.4 36.02
CDY05685 Canola plasma membrane 34.46 36.0
AT5G48380.1 Thale cress plasma membrane 34.15 35.97
TraesCS3A01G401200.1 Wheat plasma membrane 14.85 35.93
Zm00001d038195_P001 Maize plasma membrane 34.3 35.56
TraesCS3D01G395700.1 Wheat plasma membrane 14.55 35.32
TraesCS7A01G410600.1 Wheat extracellular 14.09 35.11
Bra038824.1-P Field mustard cytosol 17.76 35.05
Bra040380.1-P Field mustard extracellular 12.56 34.89
TraesCS3A01G400700.1 Wheat extracellular, plasma membrane 14.24 34.83
TraesCS3B01G433800.1 Wheat extracellular 11.94 34.67
HORVU3Hr1G090040.1 Barley extracellular, plasma membrane 13.17 34.4
TraesCS3A01G401000.1 Wheat cytosol 9.04 34.3
Bra037490.1-P Field mustard plastid 24.2 33.76
Bra001255.1-P Field mustard plasma membrane 13.32 33.59
CDY07991 Canola plasma membrane 13.32 33.59
Solyc11g015910.1.1 Tomato extracellular 7.2 33.57
Solyc02g067560.1.1 Tomato golgi, plasma membrane, vacuole 30.63 33.17
CDX86309 Canola golgi, mitochondrion, plasma membrane, plastid 23.74 33.12
Solyc05g006570.1.1 Tomato plasma membrane 30.93 33.11
TraesCS3A01G401100.1 Wheat extracellular, plasma membrane 14.55 33.1
Solyc02g087460.1.1 Tomato plasma membrane 30.17 32.78
GSMUA_Achr6P28640_001 Banana plastid 11.79 32.77
GSMUA_Achr2P05730_001 Banana cytosol, peroxisome, plasma membrane 20.52 32.06
Solyc02g092040.1.1 Tomato extracellular 12.25 29.96
Bra006366.1-P Field mustard mitochondrion 14.7 29.54
TraesCS3A01G400900.1 Wheat extracellular, plasma membrane 12.86 29.37
KRH42000 Soybean vacuole 17.15 29.02
TraesCS3B01G433900.1 Wheat extracellular, mitochondrion, nucleus, plasma membrane 13.63 28.8
CDX70708 Canola extracellular, plasma membrane, vacuole 15.62 28.49
TraesCS3D01G395800.1 Wheat plastid 14.85 27.32
Os01t0891300-01 Rice plasma membrane, plastid 0.77 1.39
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.10.1Gene3D:3.30.200.20Gene3D:3.80.10.10GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006464
GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016301GO:GO:0016740GO:GO:0019538InterPro:IPR000719InterPro:IPR032675UniProt:K4CBB9
InterPro:Kinase-like_dom_sfInterPro:LRR_dom_sfPFAM:PF07714PFscan:PS50011PANTHER:PTHR44101PANTHER:PTHR44101:SF1
InterPro:Prot_kinase_domSUPFAM:SSF52058SUPFAM:SSF56112InterPro:Ser-Thr/Tyr_kinase_cat_domEnsemblPlantsGene:Solyc07g006480.2EnsemblPlants:Solyc07g006480.2.1
TMHMM:TMhelixUniParc:UPI000276C59DSEG:seg:::
Description
No Description!
Coordinates
chr7:-:1259248..1261525
Molecular Weight (calculated)
73876.7 Da
IEP (calculated)
6.611
GRAVY (calculated)
0.021
Length
653 amino acids
Sequence
(BLAST)
001: MDLEKDHTQS CVVSNVLWKM CWKYATMQLT QVSTLVHFCK NQSIYYTTIA KANITFFKKN SISTMCKHNI LYLVLPFFIL LCIFSLICNA VQSDINCLMS
101: IKNSLEDPLN FLNTTWKFDD QREGFICKFA GIQCWHPDET RVLSISLPGM RLKGEFPRGI QNCTSITSLD LSSNELYGTI PWDISKLIGF TVMLDLSSNN
201: FSGAIPSDIA NCSFLSSLRL DGNKLEGPIP PEIGLLGRLK NFNVANNMLT GPVPSFINAT FPTESYANNP GLCGGPLRVC GFHHNMLSTL MNRRVQFACG
301: FVTGWSLFTV LGIYLFFFGL PRVNKMFLFI KKRTKVMVID ENEWPRGEEV NNDPKVSKME KIVTRMSFME LSTATMNFSQ DNEIGNGMLG KVYKALVPNG
401: WTVAIKRFHV SEDLEEEFVS EITTLGSLRH PNLVPLIGFC YERDERILVY KYMPNGNLHE WLHSTDDKAR LLDFPLRVKI VLGIAKALTW LHDGGNFHVV
501: HGNISTQCIL LDENFDPKLS NFWEATLAKT NDIDSNLSLF PIVESIDFTT YKKDVYRFGV VLLELLTRKE SYILSCSSLN LSSSSFACPL DVDKLLLGQG
601: FDNMVMQLLE LASNCMKFIP DQRPTMQQVY QTVAAIARVC DQTGDSEIQL HSD
Best Arabidopsis Sequence Match ( AT5G48380.1 )
(BLAST)
001: MMMGRLVFVI WLYNCLCLLL LSSLVDADQA NIDCLRTFKS QVEDPNRYLS TWVFGNETAG YICKFSGVTC WHDDENRVLS IKLSGYGLRG VFPPAVKLCA
101: DLTGLDLSRN NFSGPLPANI STLIPLVTIL DLSYNSFSGE IPMLISNITF LNTLMLQHNQ FTGTLPPQLA QLGRLKTFSV SDNRLVGPIP NFNQTLQFKQ
201: ELFANNLDLC GKPLDDCKSA SSSRGKVVII AAVGGLTAAA LVVGVVLFFY FRKLGAVRKK QDDPEGNRWA KSLKGQKGVK VFMFKKSVSK MKLSDLMKAT
301: EEFKKDNIIA TGRTGTMYKG RLEDGSLLMI KRLQDSQRSE KEFDAEMKTL GSVKNRNLVP LLGYCVANKE RLLMYEYMAN GYLYDQLHPA DEESFKPLDW
401: PSRLKIAIGT AKGLAWLHHS CNPRIIHRNI SSKCILLTAE FEPKISDFGL ARLMNPIDTH LSTFVNGEFG DFGYVAPEYS RTMVATPKGD VYSFGVVLLE
501: LVTGQKATSV TKVSEEKAEE ENFKGNLVEW ITKLSSESKL QEAIDRSLLG NGVDDEIFKV LKVACNCVLP EIAKQRPTMF EVYQLLRAIG ESYNFTADDD
601: ILIPSESGEG DFIEELIVAR
Arabidopsis Description
BIR1Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.