Skip to main content
crop-pal logo
Sorghum
Search for another protein from :
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 3
  • golgi 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, secretory
BaCelLo:secretory
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EES07030
EES12285
KXG24562

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G48380.1 EES07030 AT1G71830.1 19616764
AT5G48380.1 EES12285 AT1G71830.1 19616764
AT5G48380.1 KXG24562 AT1G71830.1 19616764
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0892300-01 Rice extracellular, golgi, plasma membrane 69.11 60.93
TraesCS3D01G395600.1 Wheat endoplasmic reticulum, vacuole 51.22 57.8
TraesCS3A01G400700.1 Wheat extracellular, plasma membrane 61.38 56.55
TraesCS3B01G433700.1 Wheat plasma membrane 59.35 55.3
TraesCS3D01G395100.1 Wheat extracellular, plasma membrane 57.72 54.41
TraesCS7A01G410600.1 Wheat extracellular 54.06 50.76
HORVU3Hr1G090040.1 Barley extracellular, plasma membrane 47.15 46.4
CDX69430 Canola extracellular 38.21 39.33
CDY38095 Canola plasma membrane 41.06 38.11
CDX85492 Canola plasma membrane 40.24 36.94
CDY38092 Canola plasma membrane 40.24 36.94
CDY16992 Canola cytosol, plasma membrane, plastid 29.27 35.82
Bra040380.1-P Field mustard extracellular 32.93 34.47
CDY07991 Canola plasma membrane 35.37 33.59
Bra006366.1-P Field mustard mitochondrion 44.31 33.54
Bra001255.1-P Field mustard plasma membrane 33.74 32.05
PGSC0003DMT400070667 Potato cytosol 27.64 30.77
CDX70708 Canola extracellular, plasma membrane, vacuole 43.5 29.89
EES07661 Sorghum extracellular, plasma membrane 34.55 29.82
VIT_05s0094g01290.t01 Wine grape mitochondrion 13.01 25.0
EES19530 Sorghum plasma membrane 58.94 23.93
EES09539 Sorghum plasma membrane 47.97 19.54
PGSC0003DMT400070664 Potato cytosol, plasma membrane, plastid 27.64 18.43
CDX85334 Canola plasma membrane 44.72 17.66
PGSC0003DMT400075495 Potato plasma membrane 41.87 17.52
CDY48749 Canola plasma membrane 44.31 17.5
PGSC0003DMT400075494 Potato plasma membrane 41.06 17.35
PGSC0003DMT400071183 Potato plasma membrane 42.68 17.13
Solyc06g082920.2.1 Tomato plasma membrane 42.68 17.13
VIT_00s2085g00010.t01 Wine grape plasma membrane 43.09 17.12
PGSC0003DMT400070657 Potato peroxisome, plasma membrane, plastid 27.64 16.96
GSMUA_Achr9P08150_001 Banana cytosol, nucleus, plastid 27.64 16.96
VIT_00s0220g00120.t01 Wine grape plasma membrane 42.68 16.91
CDY05685 Canola plasma membrane 42.68 16.8
AT5G48380.1 Thale cress plasma membrane 41.87 16.61
Bra020705.1-P Field mustard plasma membrane 34.15 15.22
Solyc07g006480.2.1 Tomato plasma membrane 39.43 14.85
EES11026 Sorghum plasma membrane 36.18 14.19
Solyc12g096710.1.1 Tomato plasma membrane 42.28 12.89
GSMUA_Achr2P05730_001 Banana cytosol, peroxisome, plasma membrane 17.07 10.05
PGSC0003DMT400070666 Potato plastid 18.7 9.87
CDX86309 Canola golgi, mitochondrion, plasma membrane, plastid 15.85 8.33
Bra037490.1-P Field mustard plastid 15.45 8.12
GSMUA_Achr6P28640_001 Banana plastid 3.66 3.83
Solyc12g096720.1.1 Tomato cytosol 2.03 3.52
Bra038824.1-P Field mustard cytosol 4.47 3.32
PGSC0003DMT400070694 Potato cytosol 1.22 1.42
KRH21660 Soybean cytosol 0.81 1.26
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1UniProt:A0A1B6Q7H6GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:IPR001611InterPro:IPR032675EnsemblPlants:KXG33866
ProteinID:KXG33866ProteinID:KXG33866.1InterPro:LRR_dom_sfInterPro:Leu-rich_rptPFAM:PF13516PANTHER:PTHR44101
PANTHER:PTHR44101:SF3EnsemblPlantsGene:SORBI_3003G384400SUPFAM:SSF52058TMHMM:TMhelixUniParc:UPI00081ACE71SEG:seg
Description
hypothetical protein
Coordinates
chr3:+:69716552..69717604
Molecular Weight (calculated)
27553.1 Da
IEP (calculated)
7.833
GRAVY (calculated)
0.051
Length
246 amino acids
Sequence
(BLAST)
001: MFWFDLDVQC LKIVQQSVTD PYGILKNSWI FDNGSHPGFI CKFTGVECWH PDENRVLILR LGNLGLQGQF PRGLQNCASM TGLDLSTNNF SGPIPSDIAR
101: QLPSLTSLDL SYNSFSGEIP VGIANLIYLN TLYLQYNQIN GHVPGEFSTL YRLQVFNVAY NHLSGPIPLS LMNFAESSFA GNQGLCDAPL TECGRRRSKR
201: RLRLYRINDE SSIGAAAGFV VGFVVAFYFP HLFVFSQKLH PYVVRI
Best Arabidopsis Sequence Match ( AT3G49750.1 )
(BLAST)
001: MTRSHRLLLL LLLIFQTAQR LTTADPNDEA CLKNLRQNLE DPASNLRNWT NSVFSNPCSG FTSYLPGATC NNGRIYKLSL TNLSLRGSIS PFLSNCTNLQ
101: SLDLSSNQIS GVIPPEIQYL VNLAVLNLSS NHLSGEITPQ LALCAYLNVI DLHDNELSGQ IPQQLGLLAR LSAFDVSNNK LSGQIPTYLS NRTGNFPRFN
201: ASSFIGNKGL YGYPLQEMMM KSKGLSVMAI VGIGLGSGIA SLMISFTGVC LWLRITEKKI VEEEGKISQS MPDY
Arabidopsis Description
AtRLP44RLP44 [Source:UniProtKB/TrEMBL;Acc:A0A178VI92]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.