Factsheet for PGSC0003DMT400075495

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 9
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400070819

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48380.1	PGSC0003DMT400070819	AT1G71830.1	19616764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075494	Potato	plasma membrane	79.08	79.9
Solyc12g096710.1.1	Tomato	plasma membrane	92.01	67.04
PGSC0003DMT400070664	Potato	cytosol, plasma membrane, plastid	35.37	56.37
PGSC0003DMT400070657	Potato	peroxisome, plasma membrane, plastid	37.93	55.61
PGSC0003DMT400070666	Potato	plastid	39.63	50.0
PGSC0003DMT400070694	Potato	cytosol	17.52	48.58
PGSC0003DMT400070667	Potato	cytosol	17.86	47.51
PGSC0003DMT400085762	Potato	extracellular	16.33	45.71
TraesCS3D01G395600.1	Wheat	endoplasmic reticulum, vacuole	16.84	45.41
GSMUA_Achr9P08150_001	Banana	cytosol, nucleus, plastid	29.76	43.64
TraesCS3A01G401300.1	Wheat	cytosol	17.69	43.33
PGSC0003DMT400071183	Potato	plasma membrane	44.05	42.25
TraesCS3D01G395900.1	Wheat	extracellular, golgi, plasma membrane	18.03	41.9
CDY38095	Canola	plasma membrane	18.88	41.89
KXG33866	Sorghum	cytosol	17.52	41.87
CDY38092	Canola	plasma membrane	18.88	41.42
TraesCS3D01G396100.1	Wheat	plasma membrane	18.71	41.35
CDX85492	Canola	plasma membrane	18.71	41.04
Zm00001d039672_P001	Maize	plasma membrane	17.86	41.02
CDX69430	Canola	extracellular	16.67	41.0
TraesCS3B01G433700.1	Wheat	plasma membrane	18.37	40.91
TraesCS3D01G395100.1	Wheat	extracellular, plasma membrane	18.03	40.61
Zm00001d007277_P001	Maize	plasma membrane	39.97	40.03
TraesCS3B01G434000.1	Wheat	plasma membrane	17.69	39.85
TraesCS3B01G434100.1	Wheat	plasma membrane	18.2	39.63
TraesCS3D01G395400.1	Wheat	extracellular, golgi, plasma membrane	16.5	39.59
TraesCS3A01G400800.1	Wheat	extracellular	17.86	39.47
TraesCS3A01G400700.1	Wheat	extracellular, plasma membrane	17.86	39.33
CDY16992	Canola	cytosol, plasma membrane, plastid	13.44	39.3
TraesCS3A01G401200.1	Wheat	plasma membrane	17.86	38.89
HORVU3Hr1G090040.1	Barley	extracellular, plasma membrane	16.5	38.8
TraesCS4A01G229800.1	Wheat	plasma membrane	39.97	38.78
EES19530	Sorghum	plasma membrane	39.8	38.61
TraesCS4B01G086300.1	Wheat	plasma membrane	39.8	38.61
EES09539	Sorghum	plasma membrane	39.63	38.58
TraesCS7A01G410600.1	Wheat	extracellular	17.18	38.55
TraesCS4D01G084000.1	Wheat	plasma membrane	39.63	38.45
CDY48749	Canola	plasma membrane	40.65	38.36
HORVU4Hr1G014760.3	Barley	plasma membrane	39.46	38.28
CDY05685	Canola	plasma membrane	40.65	38.24
Bra020705.1-P	Field mustard	plasma membrane	35.88	38.22
TraesCS3B01G434200.1	Wheat	plasma membrane	17.69	38.1
HORVU1Hr1G064780.1	Barley	plasma membrane	38.78	37.75
TraesCS1D01G259400.1	Wheat	plasma membrane	38.78	37.75
AT5G48380.1	Thale cress	plasma membrane	39.8	37.74
TraesCS3D01G395700.1	Wheat	plasma membrane	17.18	37.55
TraesCS1A01G259600.1	Wheat	plasma membrane	38.61	37.52
TraesCS1B01G269900.1	Wheat	plasma membrane	38.61	37.52
Bra040380.1-P	Field mustard	extracellular	14.97	37.45
CDX85334	Canola	plasma membrane	39.63	37.4
Os01t0891601-01	Rice	extracellular, golgi, plasma membrane	16.33	37.21
TraesCS3A01G401100.1	Wheat	extracellular, plasma membrane	18.03	36.93
Bra038824.1-P	Field mustard	cytosol	20.75	36.86
Zm00001d038195_P001	Maize	plasma membrane	39.46	36.83
VIT_05s0094g01290.t01	Wine grape	mitochondrion	7.99	36.72
CDY07991	Canola	plasma membrane	16.16	36.68
PGSC0003DMT400003278	Potato	plasma membrane	37.41	36.61
TraesCS3B01G433800.1	Wheat	extracellular	13.95	36.44
PGSC0003DMT400058291	Potato	plasma membrane	37.59	35.94
Bra001255.1-P	Field mustard	plasma membrane	15.48	35.14
PGSC0003DMT400017876	Potato	plasma membrane	36.39	34.97
GSMUA_Achr6P28640_001	Banana	plastid	13.95	34.89
TraesCS3A01G401000.1	Wheat	cytosol	10.2	34.88
Bra037490.1-P	Field mustard	plastid	27.38	34.4
CDX86309	Canola	golgi, mitochondrion, plasma membrane, plastid	27.04	33.97
GSMUA_Achr2P05730_001	Banana	cytosol, peroxisome, plasma membrane	23.47	33.01
TraesCS3A01G400900.1	Wheat	extracellular, plasma membrane	15.99	32.87
TraesCS3B01G433900.1	Wheat	extracellular, mitochondrion, nucleus, plasma membrane	17.18	32.69
KRH42000	Soybean	vacuole	20.75	31.61
Bra006366.1-P	Field mustard	mitochondrion	17.01	30.77
TraesCS3D01G395800.1	Wheat	plastid	18.03	29.86
CDX70708	Canola	extracellular, plasma membrane, vacuole	18.03	29.61
PGSC0003DMT400093490	Potato	extracellular	13.44	29.59
Os01t0891300-01	Rice	plasma membrane, plastid	0.34	0.56

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102599117	MapMan:18.4.1.10.1	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR032675
InterPro:Kinase-like_dom_sf	InterPro:LRR_dom_sf	UniProt:M1CV93	PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG402029358	PGSC:PGSC0003DMG402029358
EnsemblPlants:PGSC0003DMT400075495	PFscan:PS50011	PANTHER:PTHR44101	PANTHER:PTHR44101:SF1	InterPro:Prot_kinase_dom	SUPFAM:SSF52058
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295352D	RefSeq:XP_006342429.1
SEG:seg	:	:	:	:	:

Description

Serine-threonine protein kinase, plant-type [Source:PGSC_GENE;Acc:PGSC0003DMG402029358]

Coordinates

chr12:+:58287738..58290199

Molecular Weight (calculated)

66382.7 Da

IEP (calculated)

5.752

GRAVY (calculated)

-0.040

Length

588 amino acids

Sequence
(BLAST)

001: MEKTNFRTFL GFVLVLLLSR ICVCCASESD VYCLKSIKDS LHDPFNSLGF WDFSNATEGF ICKFSEVLCW HPDENKVLSL SLSGYGLIGE FPRGIQNCTS
101: LTSLDLSGNS LYGTIPSDIS AIVEHVTILD LSNNTFSGDI PPDIANCQYL NGLKLDNNYL EGEIPSRIGY LPRLKTFSVA NNYLTGPVPL FYRESITVES
201: FENNSELCGK PLKGCEDSSI WKHVDHASFI KAFVIGWVLL FTLVLVLCLF KFPTKAINKI VSLNIWRLGK KEHLTSGSEE ELSSQHKILK LEKFVTRMNF
301: TELENATSGF SEDYLVGNGM LGKVYKAILP NGWILAIKKL NDWENLEDEF VSEITTLGGL RHRNLLPLIG FCAEKQERLL VYKYMANGSL DEWLHSNEVS
401: AKILDFPLRA KIALGIAKGL AWLHHGYELH VTHGSISTRC ILLDQNLEPK ISNFWEAKFW SKNDSALSWS LFPVAEYSGL GSYKQDIYCF GVVLLELVTG
501: KEPHELTSSR NLFDHSPCLL DADRNFLGKG ADDLILQFLE LACDCVKFFP NERPTMLEVY DRLKNISQGR RDWIQKIPLS TDISSKYD

Best Arabidopsis Sequence Match ( AT5G48380.1 )
(BLAST)

001: MMMGRLVFVI WLYNCLCLLL LSSLVDADQA NIDCLRTFKS QVEDPNRYLS TWVFGNETAG YICKFSGVTC WHDDENRVLS IKLSGYGLRG VFPPAVKLCA
101: DLTGLDLSRN NFSGPLPANI STLIPLVTIL DLSYNSFSGE IPMLISNITF LNTLMLQHNQ FTGTLPPQLA QLGRLKTFSV SDNRLVGPIP NFNQTLQFKQ
201: ELFANNLDLC GKPLDDCKSA SSSRGKVVII AAVGGLTAAA LVVGVVLFFY FRKLGAVRKK QDDPEGNRWA KSLKGQKGVK VFMFKKSVSK MKLSDLMKAT
301: EEFKKDNIIA TGRTGTMYKG RLEDGSLLMI KRLQDSQRSE KEFDAEMKTL GSVKNRNLVP LLGYCVANKE RLLMYEYMAN GYLYDQLHPA DEESFKPLDW
401: PSRLKIAIGT AKGLAWLHHS CNPRIIHRNI SSKCILLTAE FEPKISDFGL ARLMNPIDTH LSTFVNGEFG DFGYVAPEYS RTMVATPKGD VYSFGVVLLE
501: LVTGQKATSV TKVSEEKAEE ENFKGNLVEW ITKLSSESKL QEAIDRSLLG NGVDDEIFKV LKVACNCVLP EIAKQRPTMF EVYQLLRAIG ESYNFTADDD
601: ILIPSESGEG DFIEELIVAR

Arabidopsis Description

BIR1Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.