Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G395700.1 | Wheat | plasma membrane | 74.69 | 68.03 |
| TraesCS3D01G396100.1 | Wheat | plasma membrane | 73.47 | 67.67 |
| TraesCS3D01G395900.1 | Wheat | extracellular, golgi, plasma membrane | 65.71 | 63.64 |
| TraesCS3D01G395600.1 | Wheat | endoplasmic reticulum, vacuole | 53.88 | 60.55 |
| TraesCS3D01G395100.1 | Wheat | extracellular, plasma membrane | 61.22 | 57.47 |
| TraesCS3D01G395800.1 | Wheat | plastid | 72.65 | 50.14 |
| Os01t0891700-01 | Rice | plasma membrane | 51.43 | 41.18 |
| CDY38095 | Canola | plasma membrane | 42.45 | 39.25 |
| CDX85492 | Canola | plasma membrane | 42.04 | 38.43 |
| CDY38092 | Canola | plasma membrane | 42.04 | 38.43 |
| CDX69430 | Canola | extracellular | 36.73 | 37.66 |
| TraesCS2D01G344600.1 | Wheat | extracellular | 33.06 | 37.16 |
| Bra040380.1-P | Field mustard | extracellular | 34.29 | 35.74 |
| CDY07991 | Canola | plasma membrane | 36.33 | 34.36 |
| CDY16992 | Canola | cytosol, plasma membrane, plastid | 27.35 | 33.33 |
| Bra001255.1-P | Field mustard | plasma membrane | 33.88 | 32.05 |
| CDX70708 | Canola | extracellular, plasma membrane, vacuole | 44.08 | 30.17 |
| Bra006366.1-P | Field mustard | mitochondrion | 39.18 | 29.54 |
| PGSC0003DMT400070667 | Potato | cytosol | 24.08 | 26.7 |
| TraesCS5D01G168900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 31.02 | 26.48 |
| TraesCS1D01G259400.1 | Wheat | plasma membrane | 55.1 | 22.35 |
| VIT_05s0094g01290.t01 | Wine grape | mitochondrion | 10.2 | 19.53 |
| TraesCS4D01G084000.1 | Wheat | plasma membrane | 47.35 | 19.14 |
| PGSC0003DMT400070664 | Potato | cytosol, plasma membrane, plastid | 25.71 | 17.07 |
| PGSC0003DMT400075494 | Potato | plasma membrane | 40.0 | 16.84 |
| GSMUA_Achr9P08150_001 | Banana | cytosol, nucleus, plastid | 27.35 | 16.71 |
| PGSC0003DMT400071183 | Potato | plasma membrane | 41.63 | 16.64 |
| VIT_00s0220g00120.t01 | Wine grape | plasma membrane | 42.04 | 16.59 |
| PGSC0003DMT400075495 | Potato | plasma membrane | 39.59 | 16.5 |
| Solyc06g082920.2.1 | Tomato | plasma membrane | 41.22 | 16.48 |
| VIT_00s2085g00010.t01 | Wine grape | plasma membrane | 40.82 | 16.16 |
| AT5G48380.1 | Thale cress | plasma membrane | 40.82 | 16.13 |
| CDY48749 | Canola | plasma membrane | 40.0 | 15.73 |
| PGSC0003DMT400070657 | Potato | peroxisome, plasma membrane, plastid | 25.31 | 15.46 |
| CDY05685 | Canola | plasma membrane | 39.18 | 15.36 |
| CDX85334 | Canola | plasma membrane | 36.73 | 14.45 |
| Solyc07g006480.2.1 | Tomato | plasma membrane | 37.96 | 14.24 |
| Bra020705.1-P | Field mustard | plasma membrane | 29.39 | 13.04 |
| Solyc12g096710.1.1 | Tomato | plasma membrane | 40.0 | 12.14 |
| GSMUA_Achr2P05730_001 | Banana | cytosol, peroxisome, plasma membrane | 13.06 | 7.66 |
| PGSC0003DMT400070666 | Potato | plastid | 14.29 | 7.51 |
| Bra037490.1-P | Field mustard | plastid | 10.2 | 5.34 |
| CDX86309 | Canola | golgi, mitochondrion, plasma membrane, plastid | 9.39 | 4.91 |
| GSMUA_Achr6P28640_001 | Banana | plastid | 2.86 | 2.98 |
| Solyc12g096720.1.1 | Tomato | cytosol | 1.63 | 2.82 |
| Bra038824.1-P | Field mustard | cytosol | 3.27 | 2.42 |
| TraesCS2D01G344700.1 | Wheat | vacuole | 2.04 | 1.93 |
| KRH21660 | Soybean | cytosol | 0.82 | 1.26 |
| PGSC0003DMT400070694 | Potato | cytosol | 0.82 | 0.94 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G395400.1 | EnsemblPlantsGene:TraesCS3D01G395400 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PANTHER:PTHR44101 | PANTHER:PTHR44101:SF3 |
| PFAM:PF13516 | PFAM:PF13855 | PRINTS:PR00019 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52058 |
| TMHMM:TMhelix | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:511201416..511202153
Molecular Weight (calculated)
27870.5 Da
IEP (calculated)
7.954
GRAVY (calculated)
-0.053
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDTKSLIL FLLLSSSSLC FGSESDILCL RSLQQSVIDP NSVLKSSWIF EYPREGYICP FIGVECWHPN ENRVLSVHLH NLGLQGTFPQ GLQHCSSMTH
101: LDLSNNNFSG PIPDISRLNP YLTYLDLSYN NFSGEIPESI VNLEYLNVLN LQHNQLSGQI PPQFDLLTRL TTFNFTDNPK LCASPMNDCP RSRKRWRALR
201: IRLHRLNDQS SIGAAVGFVV GFVAAFYFPR CFVCSKRFRA YVVRI
101: LDLSNNNFSG PIPDISRLNP YLTYLDLSYN NFSGEIPESI VNLEYLNVLN LQHNQLSGQI PPQFDLLTRL TTFNFTDNPK LCASPMNDCP RSRKRWRALR
201: IRLHRLNDQS SIGAAVGFVV GFVAAFYFPR CFVCSKRFRA YVVRI
001: MMMGRLVFVI WLYNCLCLLL LSSLVDADQA NIDCLRTFKS QVEDPNRYLS TWVFGNETAG YICKFSGVTC WHDDENRVLS IKLSGYGLRG VFPPAVKLCA
101: DLTGLDLSRN NFSGPLPANI STLIPLVTIL DLSYNSFSGE IPMLISNITF LNTLMLQHNQ FTGTLPPQLA QLGRLKTFSV SDNRLVGPIP NFNQTLQFKQ
201: ELFANNLDLC GKPLDDCKSA SSSRGKVVII AAVGGLTAAA LVVGVVLFFY FRKLGAVRKK QDDPEGNRWA KSLKGQKGVK VFMFKKSVSK MKLSDLMKAT
301: EEFKKDNIIA TGRTGTMYKG RLEDGSLLMI KRLQDSQRSE KEFDAEMKTL GSVKNRNLVP LLGYCVANKE RLLMYEYMAN GYLYDQLHPA DEESFKPLDW
401: PSRLKIAIGT AKGLAWLHHS CNPRIIHRNI SSKCILLTAE FEPKISDFGL ARLMNPIDTH LSTFVNGEFG DFGYVAPEYS RTMVATPKGD VYSFGVVLLE
501: LVTGQKATSV TKVSEEKAEE ENFKGNLVEW ITKLSSESKL QEAIDRSLLG NGVDDEIFKV LKVACNCVLP EIAKQRPTMF EVYQLLRAIG ESYNFTADDD
601: ILIPSESGEG DFIEELIVAR
101: DLTGLDLSRN NFSGPLPANI STLIPLVTIL DLSYNSFSGE IPMLISNITF LNTLMLQHNQ FTGTLPPQLA QLGRLKTFSV SDNRLVGPIP NFNQTLQFKQ
201: ELFANNLDLC GKPLDDCKSA SSSRGKVVII AAVGGLTAAA LVVGVVLFFY FRKLGAVRKK QDDPEGNRWA KSLKGQKGVK VFMFKKSVSK MKLSDLMKAT
301: EEFKKDNIIA TGRTGTMYKG RLEDGSLLMI KRLQDSQRSE KEFDAEMKTL GSVKNRNLVP LLGYCVANKE RLLMYEYMAN GYLYDQLHPA DEESFKPLDW
401: PSRLKIAIGT AKGLAWLHHS CNPRIIHRNI SSKCILLTAE FEPKISDFGL ARLMNPIDTH LSTFVNGEFG DFGYVAPEYS RTMVATPKGD VYSFGVVLLE
501: LVTGQKATSV TKVSEEKAEE ENFKGNLVEW ITKLSSESKL QEAIDRSLLG NGVDDEIFKV LKVACNCVLP EIAKQRPTMF EVYQLLRAIG ESYNFTADDD
601: ILIPSESGEG DFIEELIVAR
Arabidopsis Description
BIR1Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS4]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.