Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G401300.1 | Wheat | cytosol | 87.75 | 92.5 |
| TraesCS3D01G395700.1 | Wheat | plasma membrane | 78.66 | 73.98 |
| TraesCS3D01G395600.1 | Wheat | endoplasmic reticulum, vacuole | 62.85 | 72.94 |
| TraesCS3B01G434000.1 | Wheat | plasma membrane | 75.1 | 72.8 |
| TraesCS3D01G396100.1 | Wheat | plasma membrane | 75.49 | 71.8 |
| TraesCS3D01G395400.1 | Wheat | extracellular, golgi, plasma membrane | 63.64 | 65.71 |
| TraesCS3D01G395100.1 | Wheat | extracellular, plasma membrane | 62.85 | 60.92 |
| TraesCS3D01G395800.1 | Wheat | plastid | 77.08 | 54.93 |
| Os01t0891700-01 | Rice | plasma membrane | 52.96 | 43.79 |
| CDY38095 | Canola | plasma membrane | 43.87 | 41.89 |
| CDX69430 | Canola | extracellular | 39.53 | 41.84 |
| CDY38092 | Canola | plasma membrane | 43.87 | 41.42 |
| CDX85492 | Canola | plasma membrane | 43.48 | 41.04 |
| TraesCS2D01G344600.1 | Wheat | extracellular | 34.78 | 40.37 |
| Bra040380.1-P | Field mustard | extracellular | 34.39 | 37.02 |
| CDY16992 | Canola | cytosol, plasma membrane, plastid | 29.25 | 36.82 |
| CDY07991 | Canola | plasma membrane | 37.55 | 36.68 |
| Bra001255.1-P | Field mustard | plasma membrane | 36.36 | 35.52 |
| Bra006366.1-P | Field mustard | mitochondrion | 44.27 | 34.46 |
| CDX70708 | Canola | extracellular, plasma membrane, vacuole | 46.25 | 32.68 |
| PGSC0003DMT400070667 | Potato | cytosol | 26.88 | 30.77 |
| TraesCS5D01G168900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 34.78 | 30.66 |
| VIT_05s0094g01290.t01 | Wine grape | mitochondrion | 14.23 | 28.12 |
| TraesCS1D01G259400.1 | Wheat | plasma membrane | 64.82 | 27.15 |
| TraesCS4D01G084000.1 | Wheat | plasma membrane | 49.41 | 20.63 |
| VIT_00s0220g00120.t01 | Wine grape | plasma membrane | 46.64 | 19.0 |
| PGSC0003DMT400070664 | Potato | cytosol, plasma membrane, plastid | 27.67 | 18.97 |
| VIT_00s2085g00010.t01 | Wine grape | plasma membrane | 45.06 | 18.42 |
| CDY48749 | Canola | plasma membrane | 45.06 | 18.3 |
| PGSC0003DMT400075494 | Potato | plasma membrane | 41.9 | 18.21 |
| PGSC0003DMT400071183 | Potato | plasma membrane | 43.87 | 18.11 |
| PGSC0003DMT400075495 | Potato | plasma membrane | 41.9 | 18.03 |
| Solyc06g082920.2.1 | Tomato | plasma membrane | 43.08 | 17.78 |
| CDY05685 | Canola | plasma membrane | 43.48 | 17.6 |
| PGSC0003DMT400070657 | Potato | peroxisome, plasma membrane, plastid | 27.27 | 17.21 |
| CDX85334 | Canola | plasma membrane | 42.29 | 17.18 |
| AT5G48380.1 | Thale cress | plasma membrane | 41.5 | 16.94 |
| GSMUA_Achr9P08150_001 | Banana | cytosol, nucleus, plastid | 25.3 | 15.96 |
| Bra020705.1-P | Field mustard | plasma membrane | 33.99 | 15.58 |
| Solyc07g006480.2.1 | Tomato | plasma membrane | 37.55 | 14.55 |
| Solyc12g096710.1.1 | Tomato | plasma membrane | 41.5 | 13.01 |
| GSMUA_Achr2P05730_001 | Banana | cytosol, peroxisome, plasma membrane | 16.21 | 9.81 |
| PGSC0003DMT400070666 | Potato | plastid | 15.81 | 8.58 |
| Bra037490.1-P | Field mustard | plastid | 15.41 | 8.33 |
| CDX86309 | Canola | golgi, mitochondrion, plasma membrane, plastid | 14.23 | 7.69 |
| GSMUA_Achr6P28640_001 | Banana | plastid | 1.98 | 2.13 |
| Bra038824.1-P | Field mustard | cytosol | 2.77 | 2.11 |
| Solyc12g096720.1.1 | Tomato | cytosol | 1.19 | 2.11 |
| TraesCS2D01G344700.1 | Wheat | vacuole | 1.19 | 1.16 |
| PGSC0003DMT400070694 | Potato | cytosol | 0.4 | 0.47 |
| KRH21660 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G395900.1 | EnsemblPlantsGene:TraesCS3D01G395900 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PANTHER:PTHR44101 |
| PANTHER:PTHR44101:SF3 | PFAM:PF08263 | PFAM:PF13855 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52058 |
| TMHMM:TMhelix | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:511295397..511296158
Molecular Weight (calculated)
27979.3 Da
IEP (calculated)
4.507
GRAVY (calculated)
0.017
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDTKFLRL FLLLSSSLLC FGSEHDIQCL KSVQQSVIDP NGVLKPSWNF ENATSGFICR FTGVECWQPD ENRVLSLRLG NLGLEGSFPK GLQNCSSMTG
101: LDLSNNNFSG QIPSDILQQV QQLTFLDLSY NSFSGSIPES MSNMTYLNLL NLEHNQLSGQ IPPQFDLLTR LTTFNVAENL LSGPVPTSLQ KFSASNFAGN
201: QGLCDAPLDE CSASLAFTIR PVQIRLQRLS DQSNIRAAVG FIVWFVVAFY FPQ
101: LDLSNNNFSG QIPSDILQQV QQLTFLDLSY NSFSGSIPES MSNMTYLNLL NLEHNQLSGQ IPPQFDLLTR LTTFNVAENL LSGPVPTSLQ KFSASNFAGN
201: QGLCDAPLDE CSASLAFTIR PVQIRLQRLS DQSNIRAAVG FIVWFVVAFY FPQ
001: MTRSHRLLLL LLLIFQTAQR LTTADPNDEA CLKNLRQNLE DPASNLRNWT NSVFSNPCSG FTSYLPGATC NNGRIYKLSL TNLSLRGSIS PFLSNCTNLQ
101: SLDLSSNQIS GVIPPEIQYL VNLAVLNLSS NHLSGEITPQ LALCAYLNVI DLHDNELSGQ IPQQLGLLAR LSAFDVSNNK LSGQIPTYLS NRTGNFPRFN
201: ASSFIGNKGL YGYPLQEMMM KSKGLSVMAI VGIGLGSGIA SLMISFTGVC LWLRITEKKI VEEEGKISQS MPDY
101: SLDLSSNQIS GVIPPEIQYL VNLAVLNLSS NHLSGEITPQ LALCAYLNVI DLHDNELSGQ IPQQLGLLAR LSAFDVSNNK LSGQIPTYLS NRTGNFPRFN
201: ASSFIGNKGL YGYPLQEMMM KSKGLSVMAI VGIGLGSGIA SLMISFTGVC LWLRITEKKI VEEEGKISQS MPDY
Arabidopsis Description
AtRLP44RLP44 [Source:UniProtKB/TrEMBL;Acc:A0A178VI92]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.