Factsheet for PGSC0003DMT400070657

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, peroxisome, plastid

Predictor Summary:

plastid 3
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400070819

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48380.1	PGSC0003DMT400070819	AT1G71830.1	19616764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070694	Potato	cytosol	41.15	77.83
PGSC0003DMT400070664	Potato	cytosol, plasma membrane, plastid	61.35	66.67
PGSC0003DMT400070666	Potato	plastid	74.81	64.38
PGSC0003DMT400070667	Potato	cytosol	34.66	62.9
PGSC0003DMT400075494	Potato	plasma membrane	55.11	37.97
PGSC0003DMT400075495	Potato	plasma membrane	55.61	37.93
VIT_05s0094g01290.t01	Wine grape	mitochondrion	11.72	36.72
TraesCS3A01G401000.1	Wheat	cytosol	15.46	36.05
GSMUA_Achr9P08150_001	Banana	cytosol, nucleus, plastid	33.92	33.92
PGSC0003DMT400071183	Potato	plasma membrane	46.13	30.18
PGSC0003DMT400085762	Potato	extracellular	15.71	30.0
Bra020705.1-P	Field mustard	plasma membrane	41.15	29.89
CDX69430	Canola	extracellular	17.71	29.71
GSMUA_Achr6P28640_001	Banana	plastid	16.71	28.51
TraesCS3D01G395600.1	Wheat	endoplasmic reticulum, vacuole	15.46	28.44
TraesCS3A01G401300.1	Wheat	cytosol	16.96	28.33
KXG33866	Sorghum	cytosol	16.96	27.64
TraesCS3D01G396100.1	Wheat	plasma membrane	18.2	27.44
TraesCS1B01G269900.1	Wheat	plasma membrane	41.15	27.27
TraesCS3D01G395900.1	Wheat	extracellular, golgi, plasma membrane	17.21	27.27
Bra038824.1-P	Field mustard	cytosol	22.44	27.19
HORVU1Hr1G064780.1	Barley	plasma membrane	40.9	27.15
Zm00001d007277_P001	Maize	plasma membrane	39.65	27.09
TraesCS3A01G400800.1	Wheat	extracellular	17.96	27.07
TraesCS4A01G229800.1	Wheat	plasma membrane	40.65	26.9
TraesCS4B01G086300.1	Wheat	plasma membrane	40.65	26.9
TraesCS1A01G259600.1	Wheat	plasma membrane	40.4	26.78
TraesCS4D01G084000.1	Wheat	plasma membrane	40.4	26.73
TraesCS3B01G434100.1	Wheat	plasma membrane	17.96	26.67
EES09539	Sorghum	plasma membrane	40.15	26.66
TraesCS1D01G259400.1	Wheat	plasma membrane	40.15	26.66
HORVU4Hr1G014760.3	Barley	plasma membrane	40.15	26.57
CDY48749	Canola	plasma membrane	41.15	26.48
AT5G48380.1	Thale cress	plasma membrane	40.9	26.45
CDY38095	Canola	plasma membrane	17.46	26.42
CDY05685	Canola	plasma membrane	41.15	26.4
Bra037490.1-P	Field mustard	plastid	30.67	26.28
EES19530	Sorghum	plasma membrane	39.65	26.24
Zm00001d039672_P001	Maize	plasma membrane	16.71	26.17
CDX85492	Canola	plasma membrane	17.46	26.12
CDX86309	Canola	golgi, mitochondrion, plasma membrane, plastid	30.42	26.07
TraesCS3B01G434000.1	Wheat	plasma membrane	16.96	26.05
TraesCS3B01G434200.1	Wheat	plasma membrane	17.71	26.01
Os01t0891601-01	Rice	extracellular, golgi, plasma membrane	16.71	25.97
CDY38092	Canola	plasma membrane	17.21	25.75
TraesCS3D01G395100.1	Wheat	extracellular, plasma membrane	16.71	25.67
TraesCS3D01G395700.1	Wheat	plasma membrane	17.21	25.65
TraesCS3A01G401200.1	Wheat	plasma membrane	17.21	25.56
CDX85334	Canola	plasma membrane	39.65	25.52
TraesCS3D01G395400.1	Wheat	extracellular, golgi, plasma membrane	15.46	25.31
Zm00001d038195_P001	Maize	plasma membrane	39.15	24.92
TraesCS7A01G410600.1	Wheat	extracellular	16.21	24.81
HORVU3Hr1G090040.1	Barley	extracellular, plasma membrane	15.46	24.8
PGSC0003DMT400058291	Potato	plasma membrane	37.66	24.55
PGSC0003DMT400017876	Potato	plasma membrane	37.16	24.35
TraesCS3B01G433700.1	Wheat	plasma membrane	15.96	24.24
TraesCS3A01G400700.1	Wheat	extracellular, plasma membrane	15.96	23.97
PGSC0003DMT400003278	Potato	plasma membrane	35.91	23.96
CDY07991	Canola	plasma membrane	15.21	23.55
Bra001255.1-P	Field mustard	plasma membrane	14.71	22.78
TraesCS3A01G401100.1	Wheat	extracellular, plasma membrane	16.21	22.65
Bra040380.1-P	Field mustard	extracellular	13.22	22.55
GSMUA_Achr2P05730_001	Banana	cytosol, peroxisome, plasma membrane	23.44	22.49
TraesCS3B01G433800.1	Wheat	extracellular	12.47	22.22
CDY16992	Canola	cytosol, plasma membrane, plastid	10.97	21.89
Bra006366.1-P	Field mustard	mitochondrion	17.21	21.23
PGSC0003DMT400093490	Potato	extracellular	13.72	20.6
KRH42000	Soybean	vacuole	18.7	19.43
TraesCS3D01G395800.1	Wheat	plastid	16.96	19.15
CDX70708	Canola	extracellular, plasma membrane, vacuole	16.96	18.99
TraesCS3A01G400900.1	Wheat	extracellular, plasma membrane	13.47	18.88
TraesCS3B01G433900.1	Wheat	extracellular, mitochondrion, nucleus, plasma membrane	13.72	17.8
Os01t0891300-01	Rice	plasma membrane, plastid	0.75	0.84

Protein Annotations

Gene3D:1.10.510.10	Gene3D:3.30.200.20	Gene3D:3.80.10.10	MapMan:50.2.7	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR032675	InterPro:Kinase-like_dom_sf
InterPro:LRR_dom_sf	UniProt:M1CMI0	PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG400027467	PGSC:PGSC0003DMG400027467	EnsemblPlants:PGSC0003DMT400070657
PFscan:PS50011	PANTHER:PTHR44101	PANTHER:PTHR44101:SF1	InterPro:Prot_kinase_dom	SUPFAM:SSF52058	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	TMHMM:TMhelix	UniParc:UPI0002957835	SEG:seg	:	:

Description

Serine-threonine protein kinase, plant-type [Source:PGSC_GENE;Acc:PGSC0003DMG400027467]

Coordinates

chr7:-:1872055..1873814

Molecular Weight (calculated)

44823.3 Da

IEP (calculated)

5.101

GRAVY (calculated)

0.109

Length

401 amino acids

Sequence
(BLAST)

001: MGLIGEFPRG IQNCTSLTSL NLSNNELYGT IPSDISKLIV YAVIVDLSSN LFSGAIPSDI SNFSFLNSLK LENNKLEGLI PPEIRLLQRL KTFNVANNML
101: TGPVPNFVNA TFPDESYANN PGLCGSPLEL CVTERVVSRH ILFACGFVTG WSLSTLLGVY LFFFGVKKML LLINKRTKDL EEEFVSEITT LGILRHPNLV
201: PLIGFCYERD KRLLVYKYMP NGNLHEWLHS TDDKARLLDF PLRVKIVVGV AKALAWLHDG GNFDPKLSNF WEATFVEPND IGSNLSLSPM VEFLDFTTYK
301: KDVYKFGVVL LEILTGKESY ELSCSSLNLS SSSFASPLDV DKLLLGQGFD NMVMQLLELA SNCMKFIPDQ RPTMQQVYQI VAAIARVHDQ TGDSEIQLHL
401: D

Best Arabidopsis Sequence Match ( AT5G48380.1 )
(BLAST)

001: MMMGRLVFVI WLYNCLCLLL LSSLVDADQA NIDCLRTFKS QVEDPNRYLS TWVFGNETAG YICKFSGVTC WHDDENRVLS IKLSGYGLRG VFPPAVKLCA
101: DLTGLDLSRN NFSGPLPANI STLIPLVTIL DLSYNSFSGE IPMLISNITF LNTLMLQHNQ FTGTLPPQLA QLGRLKTFSV SDNRLVGPIP NFNQTLQFKQ
201: ELFANNLDLC GKPLDDCKSA SSSRGKVVII AAVGGLTAAA LVVGVVLFFY FRKLGAVRKK QDDPEGNRWA KSLKGQKGVK VFMFKKSVSK MKLSDLMKAT
301: EEFKKDNIIA TGRTGTMYKG RLEDGSLLMI KRLQDSQRSE KEFDAEMKTL GSVKNRNLVP LLGYCVANKE RLLMYEYMAN GYLYDQLHPA DEESFKPLDW
401: PSRLKIAIGT AKGLAWLHHS CNPRIIHRNI SSKCILLTAE FEPKISDFGL ARLMNPIDTH LSTFVNGEFG DFGYVAPEYS RTMVATPKGD VYSFGVVLLE
501: LVTGQKATSV TKVSEEKAEE ENFKGNLVEW ITKLSSESKL QEAIDRSLLG NGVDDEIFKV LKVACNCVLP EIAKQRPTMF EVYQLLRAIG ESYNFTADDD
601: ILIPSESGEG DFIEELIVAR

Arabidopsis Description

BIR1Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.