Factsheet for TraesCS3D01G395800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plasma membrane, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G343100.1
TraesCS2B01G340700.1
TraesCS2D01G321400.1
TraesCS6A01G203600.2
TraesCS6B01G223700.3
TraesCS6D01G186900.2
TraesCS7A01G293300.3
TraesCS7B01G182300.1
TraesCS7D01G291200.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48380.1	TraesCS2A01G343100.1	AT1G71830.1	19616764
AT5G48380.1	TraesCS2B01G340700.1	AT1G71830.1	19616764
AT5G48380.1	TraesCS2D01G321400.1	AT1G71830.1	19616764
AT5G48380.1	TraesCS6A01G203600.2	AT1G71830.1	19616764
AT5G48380.1	TraesCS6B01G223700.3	AT1G71830.1	19616764
AT5G48380.1	TraesCS6D01G186900.2	AT1G71830.1	19616764
AT5G48380.1	TraesCS7A01G293300.3	AT1G71830.1	19616764
AT5G48380.1	TraesCS7B01G182300.1	AT1G71830.1	19616764
AT5G48380.1	TraesCS7D01G291200.3	AT1G71830.1	19616764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G434100.1	Wheat	plasma membrane	63.1	82.96
TraesCS3D01G395700.1	Wheat	plasma membrane	61.69	81.41
TraesCS3D01G396100.1	Wheat	plasma membrane	59.44	79.32
TraesCS3D01G395900.1	Wheat	extracellular, golgi, plasma membrane	54.93	77.08
TraesCS3D01G395600.1	Wheat	endoplasmic reticulum, vacuole	45.07	73.39
TraesCS3D01G395400.1	Wheat	extracellular, golgi, plasma membrane	50.14	72.65
TraesCS3D01G395100.1	Wheat	extracellular, plasma membrane	48.17	65.52
Os01t0891700-01	Rice	plasma membrane	40.85	47.39
CDY38095	Canola	plasma membrane	32.39	43.4
CDX69430	Canola	extracellular	29.01	43.1
CDX85492	Canola	plasma membrane	32.11	42.54
CDY38092	Canola	plasma membrane	32.11	42.54
TraesCS2D01G344600.1	Wheat	extracellular	25.35	41.28
CDY16992	Canola	cytosol, plasma membrane, plastid	23.1	40.8
CDY07991	Canola	plasma membrane	27.04	37.07
Bra040380.1-P	Field mustard	extracellular	24.23	36.6
Bra006366.1-P	Field mustard	mitochondrion	32.68	35.69
Bra001255.1-P	Field mustard	plasma membrane	25.35	34.75
CDX70708	Canola	extracellular, plasma membrane, vacuole	33.8	33.52
TraesCS5D01G168900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	25.35	31.36
PGSC0003DMT400070667	Potato	cytosol	18.31	29.41
TraesCS1D01G259400.1	Wheat	plasma membrane	47.61	27.98
VIT_05s0094g01290.t01	Wine grape	mitochondrion	9.58	26.56
TraesCS4D01G084000.1	Wheat	plasma membrane	35.77	20.96
PGSC0003DMT400070664	Potato	cytosol, plasma membrane, plastid	19.72	18.97
CDY48749	Canola	plasma membrane	33.24	18.94
VIT_00s0220g00120.t01	Wine grape	plasma membrane	32.68	18.68
CDY05685	Canola	plasma membrane	32.68	18.56
PGSC0003DMT400071183	Potato	plasma membrane	31.83	18.43
AT5G48380.1	Thale cress	plasma membrane	32.11	18.39
Solyc06g082920.2.1	Tomato	plasma membrane	31.27	18.11
PGSC0003DMT400075495	Potato	plasma membrane	29.86	18.03
CDX85334	Canola	plasma membrane	31.55	17.98
PGSC0003DMT400075494	Potato	plasma membrane	29.3	17.87
VIT_00s2085g00010.t01	Wine grape	plasma membrane	30.42	17.45
PGSC0003DMT400070657	Potato	peroxisome, plasma membrane, plastid	19.15	16.96
GSMUA_Achr9P08150_001	Banana	cytosol, nucleus, plastid	19.15	16.96
Bra020705.1-P	Field mustard	plasma membrane	25.07	16.12
Solyc07g006480.2.1	Tomato	plasma membrane	27.32	14.85
Solyc12g096710.1.1	Tomato	plasma membrane	29.86	13.14
GSMUA_Achr2P05730_001	Banana	cytosol, peroxisome, plasma membrane	11.83	10.05
PGSC0003DMT400070666	Potato	plastid	12.68	9.66
CDX86309	Canola	golgi, mitochondrion, plasma membrane, plastid	11.55	8.76
Bra037490.1-P	Field mustard	plastid	11.55	8.76
GSMUA_Achr6P28640_001	Banana	plastid	1.97	2.98
Solyc12g096720.1.1	Tomato	cytosol	1.13	2.82
Bra038824.1-P	Field mustard	cytosol	2.25	2.42
TraesCS2D01G344700.1	Wheat	vacuole	1.41	1.93
PGSC0003DMT400070694	Potato	cytosol	0.85	1.42
KRH21660	Soybean	cytosol	0.28	0.63

Protein Annotations

EnsemblPlants:TraesCS3D01G395800.1	EnsemblPlantsGene:TraesCS3D01G395800	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
PANTHER:PTHR44101	PANTHER:PTHR44101:SF3	PFAM:PF08263	SEG:seg	SUPFAM:SSF52058	TMHMM:TMhelix
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:511292559..511293813

Molecular Weight (calculated)

38975.8 Da

IEP (calculated)

7.807

GRAVY (calculated)

0.111

Length

355 amino acids

Sequence
(BLAST)

001: MGTIGSRHTV CLSSLYTCGK SFQVNKTSGF GRRKVHTHVE AFSVLKGCTR SSAADVASDL PGSAGDVGIY ELQVLAEQSY CLFHSMLAMA DDTNFLLLVL
101: LLSCSSLCFG SQADIECLKS VQQSVIDPNG VLKSSWNFEN ATAGFICRFT GVACWHPDED RVLSLRLGNL GLEGPFPRGL QNCSSMSGLD LSNNNFSGPI
201: PSEIAREVPY LTFLDLSYNS FSGSIPQNIS QMTYLNVLNL QHNQLSGQIP PRFVFLTRLF EFNVADNLLS GFIPPLLQKF SSSNFAGNQG LCGAPLDDCP
301: PSKRRWRPVR IRLHRLNDQS SIGVAVGFVV GFVVAFYFPH LFVCSERLRA YVVRI

Best Arabidopsis Sequence Match ( AT1G27190.1 )
(BLAST)

001: MKKIFITLLW LLFISSFLCS SSSAEDDVLC LQGLKNSLID PSSRLSSWSF PNSSASSICK LTGVSCWNEK ENRIISLQLQ SMQLAGEIPE SLKLCRSLQS
101: LDLSGNDLSG SIPSQICSWL PYLVTLDLSG NKLGGSIPTQ IVECKFLNAL ILSDNKLSGS IPSQLSRLDR LRRLSLAGND LSGTIPSELA RFGGDDFSGN
201: NGLCGKPLSR CGALNGRNLS IIIVAGVLGA VGSLCVGLVI FWWFFIREGS RKKKGYGAGK SKDDSDWIGL LRSHKLVQVT LFQKPIVKIK LGDLMAATNN
301: FSSGNIDVSS RTGVSYKADL PDGSALAVKR LSACGFGEKQ FRSEMNKLGE LRHPNLVPLL GYCVVEDERL LVYKHMVNGT LFSQLHNGGL CDAVLDWPTR
401: RAIGVGAAKG LAWLHHGCQP PYLHQFISSN VILLDDDFDA RITDYGLAKL VGSRDSNDSS FNNGDLGELG YVAPEYSSTM VASLKGDVYG FGIVLLELVT
501: GQKPLSVING VEGFKGSLVD WVSQYLGTGR SKDAIDRSIC DKGHDEEILQ FLKIACSCVV SRPKERPTMI QVYESLKNMA DKHGVSEHYD EFPLVFNKQE
601: A

Arabidopsis Description

Probable inactive receptor kinase At1g27190 [Source:UniProtKB/Swiss-Prot;Acc:O04567]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.