Factsheet for PGSC0003DMT400070664

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400070819

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48380.1	PGSC0003DMT400070819	AT1G71830.1	19616764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070667	Potato	cytosol	40.65	67.87
PGSC0003DMT400070657	Potato	peroxisome, plasma membrane, plastid	66.67	61.35
PGSC0003DMT400070666	Potato	plastid	68.29	54.08
PGSC0003DMT400075494	Potato	plasma membrane	57.45	36.43
PGSC0003DMT400075495	Potato	plasma membrane	56.37	35.37
VIT_05s0094g01290.t01	Wine grape	mitochondrion	12.2	35.16
TraesCS3A01G401000.1	Wheat	cytosol	16.26	34.88
GSMUA_Achr9P08150_001	Banana	cytosol, nucleus, plastid	37.4	34.41
CDX69430	Canola	extracellular	19.24	29.71
PGSC0003DMT400085762	Potato	extracellular	16.53	29.05
TraesCS3D01G395600.1	Wheat	endoplasmic reticulum, vacuole	17.07	28.9
TraesCS3A01G401300.1	Wheat	cytosol	18.7	28.75
PGSC0003DMT400071183	Potato	plasma membrane	46.34	27.9
PGSC0003DMT400070694	Potato	cytosol	15.99	27.83
TraesCS3D01G395900.1	Wheat	extracellular, golgi, plasma membrane	18.97	27.67
KXG33866	Sorghum	cytosol	18.43	27.64
TraesCS3A01G400800.1	Wheat	extracellular	19.78	27.44
Bra020705.1-P	Field mustard	plasma membrane	40.65	27.17
CDY38095	Canola	plasma membrane	19.51	27.17
TraesCS3B01G434100.1	Wheat	plasma membrane	19.78	27.04
Zm00001d039672_P001	Maize	plasma membrane	18.7	26.95
CDX85492	Canola	plasma membrane	19.51	26.87
CDY38092	Canola	plasma membrane	19.51	26.87
Zm00001d007277_P001	Maize	plasma membrane	42.55	26.75
TraesCS3B01G434200.1	Wheat	plasma membrane	19.78	26.74
TraesCS3D01G396100.1	Wheat	plasma membrane	19.24	26.69
EES09539	Sorghum	plasma membrane	43.36	26.49
TraesCS3B01G434000.1	Wheat	plasma membrane	18.43	26.05
TraesCS3D01G395700.1	Wheat	plasma membrane	18.97	26.02
TraesCS3A01G401200.1	Wheat	plasma membrane	18.97	25.93
TraesCS4A01G229800.1	Wheat	plasma membrane	42.55	25.91
TraesCS3D01G395400.1	Wheat	extracellular, golgi, plasma membrane	17.07	25.71
TraesCS3D01G395100.1	Wheat	extracellular, plasma membrane	17.89	25.29
HORVU1Hr1G064780.1	Barley	plasma membrane	41.19	25.17
TraesCS4B01G086300.1	Wheat	plasma membrane	41.19	25.08
TraesCS4D01G084000.1	Wheat	plasma membrane	41.19	25.08
HORVU4Hr1G014760.3	Barley	plasma membrane	40.92	24.92
Os01t0891601-01	Rice	extracellular, golgi, plasma membrane	17.34	24.81
TraesCS1A01G259600.1	Wheat	plasma membrane	40.65	24.79
TraesCS1B01G269900.1	Wheat	plasma membrane	40.65	24.79
EES19530	Sorghum	plasma membrane	40.65	24.75
TraesCS1D01G259400.1	Wheat	plasma membrane	40.38	24.67
TraesCS3B01G433700.1	Wheat	plasma membrane	17.62	24.62
TraesCS7A01G410600.1	Wheat	extracellular	17.34	24.43
HORVU3Hr1G090040.1	Barley	extracellular, plasma membrane	16.53	24.4
CDY48749	Canola	plasma membrane	40.65	24.08
CDY05685	Canola	plasma membrane	40.65	24.0
Zm00001d038195_P001	Maize	plasma membrane	40.92	23.97
Bra037490.1-P	Field mustard	plastid	30.35	23.93
CDX86309	Canola	golgi, mitochondrion, plasma membrane, plastid	30.08	23.72
AT5G48380.1	Thale cress	plasma membrane	39.84	23.71
CDX85334	Canola	plasma membrane	39.3	23.27
TraesCS3A01G400700.1	Wheat	extracellular, plasma membrane	16.8	23.22
Bra001255.1-P	Field mustard	plasma membrane	16.26	23.17
CDY07991	Canola	plasma membrane	16.26	23.17
TraesCS3B01G433800.1	Wheat	extracellular	14.09	23.11
CDY16992	Canola	cytosol, plasma membrane, plastid	12.2	22.39
TraesCS3A01G401100.1	Wheat	extracellular, plasma membrane	17.34	22.3
Bra038824.1-P	Field mustard	cytosol	19.78	22.05
PGSC0003DMT400003278	Potato	plasma membrane	35.5	21.8
PGSC0003DMT400017876	Potato	plasma membrane	35.77	21.57
PGSC0003DMT400058291	Potato	plasma membrane	35.77	21.46
Bra040380.1-P	Field mustard	extracellular	13.55	21.28
Bra006366.1-P	Field mustard	mitochondrion	17.89	20.31
TraesCS3D01G395800.1	Wheat	plastid	18.97	19.72
GSMUA_Achr2P05730_001	Banana	cytosol, peroxisome, plasma membrane	22.22	19.62
KRH42000	Soybean	vacuole	20.05	19.17
CDX70708	Canola	extracellular, plasma membrane, vacuole	18.43	18.99
TraesCS3A01G400900.1	Wheat	extracellular, plasma membrane	14.63	18.88
PGSC0003DMT400093490	Potato	extracellular	13.55	18.73
TraesCS3B01G433900.1	Wheat	extracellular, mitochondrion, nucleus, plasma membrane	15.18	18.12
GSMUA_Achr6P28640_001	Banana	plastid	8.67	13.62
Os01t0891300-01	Rice	plasma membrane, plastid	0.81	0.84

Protein Annotations

Gene3D:1.10.510.10	Gene3D:3.30.200.20	Gene3D:3.80.10.10	MapMan:50.2.7	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR032675	InterPro:Kinase-like_dom_sf
InterPro:LRR_dom_sf	UniProt:M1CMI1	PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG400027468	PGSC:PGSC0003DMG400027468	EnsemblPlants:PGSC0003DMT400070664
PFscan:PS50011	PANTHER:PTHR44101	PANTHER:PTHR44101:SF1	InterPro:Prot_kinase_dom	SUPFAM:SSF52058	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	TMHMM:TMhelix	UniParc:UPI000296C90B	SEG:seg	:	:

Description

Leucine-rich repeat family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027468]

Coordinates

chr7:-:1876213..1878372

Molecular Weight (calculated)

41348.2 Da

IEP (calculated)

5.632

GRAVY (calculated)

0.142

Length

369 amino acids

Sequence
(BLAST)

001: MGLIGEFPRG IQNCTSLTSL NLSNNELYGT IPSDISKLIA FAVDIDLSSN LFSGAIPSDI SNFSFLNSLK LENNKLEGLI PPEICWLQRL RMFNVADNML
101: TGPVPNFVNA AFPAESYANN PGLCGSPLEL CVTERVVSRH ILFACGFVTG WSLSTLLGVY FFFGVKKMFL LINKRTKVMV IDGNEVNSDP KILKLEKIVT
201: RMSFMELSKA TLNFSQDNEI GNGMLGKLYK ALVPNGWTVA IKRLQSSEDL EEEFVSEITT LGILRHPNLV PLVGFCYERD ERLLVYKYMP NGNLHEWLHS
301: TDDKAQFLDF PLRVKIVVSV AKALAWLHDS GNFHVVHSNI STQCILLDEI LHIELLESKF VEQLFCQSS

Best Arabidopsis Sequence Match ( AT1G27190.1 )
(BLAST)

001: MKKIFITLLW LLFISSFLCS SSSAEDDVLC LQGLKNSLID PSSRLSSWSF PNSSASSICK LTGVSCWNEK ENRIISLQLQ SMQLAGEIPE SLKLCRSLQS
101: LDLSGNDLSG SIPSQICSWL PYLVTLDLSG NKLGGSIPTQ IVECKFLNAL ILSDNKLSGS IPSQLSRLDR LRRLSLAGND LSGTIPSELA RFGGDDFSGN
201: NGLCGKPLSR CGALNGRNLS IIIVAGVLGA VGSLCVGLVI FWWFFIREGS RKKKGYGAGK SKDDSDWIGL LRSHKLVQVT LFQKPIVKIK LGDLMAATNN
301: FSSGNIDVSS RTGVSYKADL PDGSALAVKR LSACGFGEKQ FRSEMNKLGE LRHPNLVPLL GYCVVEDERL LVYKHMVNGT LFSQLHNGGL CDAVLDWPTR
401: RAIGVGAAKG LAWLHHGCQP PYLHQFISSN VILLDDDFDA RITDYGLAKL VGSRDSNDSS FNNGDLGELG YVAPEYSSTM VASLKGDVYG FGIVLLELVT
501: GQKPLSVING VEGFKGSLVD WVSQYLGTGR SKDAIDRSIC DKGHDEEILQ FLKIACSCVV SRPKERPTMI QVYESLKNMA DKHGVSEHYD EFPLVFNKQE
601: A

Arabidopsis Description

Probable inactive receptor kinase At1g27190 [Source:UniProtKB/Swiss-Prot;Acc:O04567]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.