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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 4
  • golgi 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane
Any Predictor:cytosol, secretory
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU2Hr1G080020.6
HORVU6Hr1G049080.7
HORVU7Hr1G068990.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G48380.1 HORVU2Hr1G080020.6 AT1G71830.1 19616764
AT5G48380.1 HORVU6Hr1G049080.7 AT1G71830.1 19616764
AT5G48380.1 HORVU7Hr1G068990.2 AT1G71830.1 19616764
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3D01G395100.1 Wheat extracellular, plasma membrane 76.8 73.56
TraesCS3B01G433700.1 Wheat plasma membrane 75.2 71.21
Os01t0892300-01 Rice extracellular, golgi, plasma membrane 56.0 50.18
KXG33866 Sorghum cytosol 46.4 47.15
HORVU2Hr1G084210.1 Barley extracellular 34.0 38.81
CDY38095 Canola plasma membrane 37.6 35.47
CDY07991 Canola plasma membrane 36.0 34.75
CDY38092 Canola plasma membrane 37.2 34.7
CDX85492 Canola plasma membrane 36.8 34.33
Bra040380.1-P Field mustard extracellular 32.0 34.04
CDX69430 Canola extracellular 32.4 33.89
Bra001255.1-P Field mustard plasma membrane 34.8 33.59
CDY16992 Canola cytosol, plasma membrane, plastid 23.6 29.35
HORVU0Hr1G012140.1 Barley endoplasmic reticulum, extracellular, plasma membrane 32.8 28.57
PGSC0003DMT400070667 Potato cytosol 25.2 28.51
CDX70708 Canola extracellular, plasma membrane, vacuole 39.6 27.65
Bra006366.1-P Field mustard mitochondrion 35.2 27.08
VIT_05s0094g01290.t01 Wine grape mitochondrion 10.8 21.09
HORVU1Hr1G064780.1 Barley plasma membrane 50.4 20.86
HORVU4Hr1G014760.3 Barley plasma membrane 42.8 17.66
PGSC0003DMT400075494 Potato plasma membrane 38.8 16.67
CDY48749 Canola plasma membrane 41.2 16.53
PGSC0003DMT400070664 Potato cytosol, plasma membrane, plastid 24.4 16.53
PGSC0003DMT400075495 Potato plasma membrane 38.8 16.5
CDY05685 Canola plasma membrane 41.2 16.48
PGSC0003DMT400070657 Potato peroxisome, plasma membrane, plastid 24.8 15.46
CDX85334 Canola plasma membrane 38.4 15.41
VIT_00s0220g00120.t01 Wine grape plasma membrane 38.0 15.3
Solyc06g082920.2.1 Tomato plasma membrane 36.8 15.01
AT5G48380.1 Thale cress plasma membrane 37.2 15.0
VIT_00s2085g00010.t01 Wine grape plasma membrane 36.4 14.7
PGSC0003DMT400071183 Potato plasma membrane 36.0 14.68
Bra020705.1-P Field mustard plasma membrane 31.2 14.13
GSMUA_Achr9P08150_001 Banana cytosol, nucleus, plastid 22.4 13.97
Solyc07g006480.2.1 Tomato plasma membrane 34.4 13.17
Solyc12g096710.1.1 Tomato plasma membrane 39.2 12.14
PGSC0003DMT400070666 Potato plastid 16.4 8.8
GSMUA_Achr2P05730_001 Banana cytosol, peroxisome, plasma membrane 14.0 8.37
Bra037490.1-P Field mustard plastid 14.0 7.48
CDX86309 Canola golgi, mitochondrion, plasma membrane, plastid 13.6 7.26
GSMUA_Achr6P28640_001 Banana plastid 2.0 2.13
PGSC0003DMT400070694 Potato cytosol 1.2 1.42
Solyc12g096720.1.1 Tomato cytosol 0.8 1.41
HORVU2Hr1G084260.1 Barley plastid 3.2 1.29
Bra038824.1-P Field mustard cytosol 1.6 1.21
KRH21660 Soybean cytosol 0.4 0.63
Protein Annotations
EnsemblPlants:HORVU3Hr1G090040.1EnsemblPlantsGene:HORVU3Hr1G090040Gene3D:3.80.10.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR001611InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rptPANTHER:PTHR44101PANTHER:PTHR44101:SF3
PFAM:PF00560SEG:segSignalP:SignalP-noTMSUPFAM:SSF52058UniParc:UPI000B4821C6UniProt:A0A287M7U5
MapMan:35.1:::::
Description
No Description!
Coordinates
chrchr3H:-:630677524..630678276
Molecular Weight (calculated)
27152.9 Da
IEP (calculated)
8.836
GRAVY (calculated)
0.051
Length
250 amino acids
Sequence
(BLAST)
001: MTAMTINIKF LLWLLLLFSA SFCHGSELDI QCLKSVQKSV ADPNGILKSS WKLNSSGVSG YICESTGVEC WSHDQNRVLS LRLSSLGLQG PFPKGLDDCT
101: STIALDLSGN RFSGPIPSRI AHDAPHLSYL DLSNNGFSGE IPDSIADMVY HNVLNLEHNR LDGPIPERFN ALGRLTTLSV ADNLLSGSIP ALLRKFPASH
201: FAGNQGLCGA PLERPSGGRR VRGGLLLLLV LYFPRWLGLS KRLRASGLRV
Best Arabidopsis Sequence Match ( AT3G28450.1 )
(BLAST)
001: MKEIGSKPRK LLPLCFIIFL CFCSSVMAAD EDDIRCLRGL KASLTDPQNA LKSWNFDNTT LGFLCNFVGV SCWNNQENRV INLELRDMGL SGKIPDSLQY
101: CASLQKLDLS SNRLSGNIPT ELCNWLPFLV SLDLSNNELN GEIPPDLAKC SFVNSLVLSD NRLSGQIPVQ FSALGRLGRF SVANNDLSGR IPVFFSSPSY
201: SSDDFSGNKG LCGRPLSSSC GGLSKKNLGI IIAAGVFGAA ASMLLAFGIW WYYHLKWTRR RRSGLTEVGV SGLAQRLRSH KLTQVSLFQK PLVKVKLGDL
301: MAATNNFNSE NIIVSTRTGT TYKALLPDGS ALAVKHLSTC KLGEREFRYE MNQLWELRHS NLAPLLGFCV VEEEKFLVYK YMSNGTLHSL LDSNRGELDW
401: STRFRIGLGA ARGLAWLHHG CRPPILHQNI CSSVILIDED FDARIIDSGL ARLMVPSDNN ESSFMTGDLG EFGYVAPEYS TTMLASLKGD VYGLGVVLLE
501: LATGLKAVGG EGFKGSLVDW VKQLESSGRI AETFDENIRG KGHDEEISKF VEIALNCVSS RPKERWSMFQ AYQSLKAIAE KQGYSFSEQD DDFPLIFDTQ
601: ENEKV
Arabidopsis Description
BIR2Inactive LRR receptor-like serine/threonine-protein kinase BIR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSI9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.