Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 8
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0457800-01 | |
| Os06t0225300-01 | |
| Os08t0174700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48380.1 | Os04t0457800-01 | AT1G71830.1 | 19616764 |
| AT5G48380.1 | Os06t0225300-01 | AT1G71830.1 | 19616764 |
| AT5G48380.1 | Os08t0174700-01 | AT1G71830.1 | 19616764 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33866 | Sorghum | cytosol | 60.93 | 69.11 |
| TraesCS3B01G433700.1 | Wheat | plasma membrane | 63.08 | 66.67 |
| TraesCS3D01G395600.1 | Wheat | endoplasmic reticulum, vacuole | 51.61 | 66.06 |
| TraesCS3A01G400700.1 | Wheat | extracellular, plasma membrane | 62.72 | 65.54 |
| TraesCS3D01G395100.1 | Wheat | extracellular, plasma membrane | 61.29 | 65.52 |
| TraesCS7A01G410600.1 | Wheat | extracellular | 54.84 | 58.4 |
| HORVU3Hr1G090040.1 | Barley | extracellular, plasma membrane | 50.18 | 56.0 |
| Os01t0891601-01 | Rice | extracellular, golgi, plasma membrane | 48.75 | 52.71 |
| Os01t0891700-01 | Rice | plasma membrane | 55.2 | 50.33 |
| CDY38095 | Canola | plasma membrane | 44.8 | 47.17 |
| CDX69430 | Canola | extracellular | 39.43 | 46.03 |
| CDY38092 | Canola | plasma membrane | 44.09 | 45.9 |
| CDX85492 | Canola | plasma membrane | 43.73 | 45.52 |
| CDY16992 | Canola | cytosol, plasma membrane, plastid | 30.11 | 41.79 |
| Bra040380.1-P | Field mustard | extracellular | 33.33 | 39.57 |
| CDY07991 | Canola | plasma membrane | 36.2 | 39.0 |
| Bra001255.1-P | Field mustard | plasma membrane | 35.13 | 37.84 |
| Bra006366.1-P | Field mustard | mitochondrion | 42.29 | 36.31 |
| CDX70708 | Canola | extracellular, plasma membrane, vacuole | 45.52 | 35.47 |
| Os05t0399800-01 | Rice | extracellular | 31.9 | 34.9 |
| Os05t0414700-01 | Rice | plasma membrane | 60.22 | 27.68 |
| Os09t0131200-01 | Rice | plasma membrane | 27.96 | 27.66 |
| CDY48749 | Canola | plasma membrane | 46.24 | 20.71 |
| CDY05685 | Canola | plasma membrane | 44.44 | 19.84 |
| AT5G48380.1 | Thale cress | plasma membrane | 43.37 | 19.52 |
| CDX85334 | Canola | plasma membrane | 41.58 | 18.62 |
| GSMUA_Achr9P08150_001 | Banana | cytosol, nucleus, plastid | 25.81 | 17.96 |
| Bra020705.1-P | Field mustard | plasma membrane | 33.69 | 17.03 |
| Os11t0249900-01 | Rice | plasma membrane | 27.96 | 15.57 |
| Os04t0487200-01 | Rice | plasma membrane | 32.97 | 14.79 |
| GSMUA_Achr2P05730_001 | Banana | cytosol, peroxisome, plasma membrane | 18.28 | 12.2 |
| Bra037490.1-P | Field mustard | plastid | 16.49 | 9.83 |
| CDX86309 | Canola | golgi, mitochondrion, plasma membrane, plastid | 15.77 | 9.4 |
| GSMUA_Achr6P28640_001 | Banana | plastid | 4.3 | 5.11 |
| Bra038824.1-P | Field mustard | cytosol | 4.3 | 3.63 |
| Os01t0891300-01 | Rice | plasma membrane, plastid | 2.87 | 2.23 |
| KRH21660 | Soybean | cytosol | 0.36 | 0.63 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:4324921 | EMBL:AK241749 | ProteinID:BAF06973.1 | ProteinID:BAS75672.1 |
| ProteinID:EAZ14454.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | EnsemblPlantsGene:Os01g0892300 |
| EnsemblPlants:Os01t0892300-01 | PFAM:PF00560 | PANTHER:PTHR44101 | PANTHER:PTHR44101:SF3 | UniProt:Q0JH05 | SUPFAM:SSF52058 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000009F524 | RefSeq:XP_015634318.1 | RefSeq:XP_015634323.1 | SEG:seg |
Description
Leucine-rich repeat, plant specific containing protein. (Os01t0892300-01)
Coordinates
chr1:+:38795480..38797375
Molecular Weight (calculated)
30950.0 Da
IEP (calculated)
6.970
GRAVY (calculated)
0.059
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGAKLLLW LLLLSSSPWC FCSELDVQCL ETLYRSVIDS NGILQSSWTF VDNGTDGYIC KFTGVECWHP DENRVLSLRL GNLGLQGPFP QGLQSCTSMI
101: GLDLSSNIFS GPIPADIATQ VPCLTSLDLS YNSFSGPIPA SISNMTYLNT LNLQHNQFSG EIPRQFDSIG RLISFNVADN LLSGPIPSSL QKFSASNFAE
201: NQGLCGAPLD NCPRRRRWRL RLHRINDESS IGAAVGFVVG FVVAFYFPHW FVFSKRLHPY IFQIWSIPSG NLSANLRRT
101: GLDLSSNIFS GPIPADIATQ VPCLTSLDLS YNSFSGPIPA SISNMTYLNT LNLQHNQFSG EIPRQFDSIG RLISFNVADN LLSGPIPSSL QKFSASNFAE
201: NQGLCGAPLD NCPRRRRWRL RLHRINDESS IGAAVGFVVG FVVAFYFPHW FVFSKRLHPY IFQIWSIPSG NLSANLRRT
001: MPVNHRFTFS YRLLFLIFLL SFETAQRLVT GDPNDEACLT NLRQSLEDPA NNLRNWTKSF FINPCSGFSS YLHGVICNNG RIYKLSLTNL SLRGSISPFL
101: SNCTNLQSLD LSSNQISGEI PPQLQFFVNL AVLNLSSNRL SGQISPQIAL CAYLNVIDLH DNQLSGQIPF QFGLLARLTA FDVSNNKLSG QIPSNLAMRN
201: GNLPRFNASS FIGNKKLFGY PLEEMKNKGL SIMAIVGIGL GSGIASLVIS FTGVCIWLKI TEKKMEEEEG KISHSMPVY
101: SNCTNLQSLD LSSNQISGEI PPQLQFFVNL AVLNLSSNRL SGQISPQIAL CAYLNVIDLH DNQLSGQIPF QFGLLARLTA FDVSNNKLSG QIPSNLAMRN
201: GNLPRFNASS FIGNKKLFGY PLEEMKNKGL SIMAIVGIGL GSGIASLVIS FTGVCIWLKI TEKKMEEEEG KISHSMPVY
Arabidopsis Description
ATRLP57Receptor-like protein 57 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH86]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.