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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 9
  • golgi 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, secretory
BaCelLo:secretory
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plasma membrane: 18260611
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0718300-01
Os01t0891300-01
Os01t0891601-01
Os01t0891700-01
Os01t0892300-01
Os03t0151800-02
Os03t0151900-01
Os04t0457800-01
Os05t0414700-01
Os06t0225300-01
Os08t0174700-01
Os09t0509700-01
Os10t0441800-01
Os10t0442600-01
Os11t0249900-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G34210.1 Os01t0891300-01 AT5G48380.1 19616764
AT1G34210.1 Os01t0891601-01 AT5G48380.1 19616764
AT1G34210.1 Os01t0891700-01 AT5G48380.1 19616764
AT1G34210.1 Os01t0892300-01 AT5G48380.1 19616764
AT1G34210.1 Os05t0414700-01 AT5G48380.1 19616764
AT1G34210.1 Os11t0249900-01 AT5G48380.1 19616764
AT1G71830.1 Os04t0457800-01 AT1G71830.1 11397085
AT1G71830.1 Os06t0225300-01 AT1G71830.1 11397085
AT1G71830.1 Os08t0174700-01 AT1G71830.1 11397085
AT1G71830.1 Os04t0457800-01 AT1G71830.1 16621602
AT1G71830.1 Os06t0225300-01 AT1G71830.1 16621602
AT1G71830.1 Os08t0174700-01 AT1G71830.1 16621602
AT1G71830.1 Os09t0509700-01 AT2G33500.1 16473966
AT1G71830.1 Os03t0151800-02 AT3G09840.1 15592873
AT1G71830.1 Os10t0442600-01 AT3G09840.1 15592873
AT1G71830.1 Os03t0151800-02 AT3G09840.1 16473966
AT1G71830.1 Os10t0442600-01 AT3G09840.1 16473966
AT1G71830.1 Os03t0151800-02 AT3G09840.1 16621602
AT1G71830.1 Os10t0442600-01 AT3G09840.1 16621602
AT1G71830.1 Os03t0151800-02 AT3G09840.1 17693538
AT1G71830.1 Os10t0442600-01 AT3G09840.1 17693538
AT1G71830.1 Os03t0151900-01 AT3G54840.1 16621602
AT1G71830.1 Os10t0441800-01 AT3G54840.1 16621602
AT1G71830.1 Os01t0718300-01 AT4G39400.1 16473966
AT2G13790.1 Os01t0718300-01 AT4G39400.1 17600708
AT2G13790.1 Os01t0891300-01 AT5G48380.1 19616764
AT2G13790.1 Os01t0891601-01 AT5G48380.1 19616764
AT2G13790.1 Os01t0891700-01 AT5G48380.1 19616764
AT2G13790.1 Os01t0892300-01 AT5G48380.1 19616764
AT2G13790.1 Os05t0414700-01 AT5G48380.1 19616764
AT2G13790.1 Os11t0249900-01 AT5G48380.1 19616764
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7A01G293300.3 Wheat plasma membrane 94.39 94.69
TraesCS7D01G291200.3 Wheat plasma membrane 94.07 94.53
TraesCS7B01G182300.1 Wheat plasma membrane 93.91 94.21
KXG24562 Sorghum plasma membrane 94.23 93.19
Zm00001d024430_P002 Maize plasma membrane 94.55 92.48
GSMUA_Achr7P17210_001 Banana cytosol 71.47 90.47
VIT_07s0031g01410.t01 Wine grape plasma membrane 88.3 88.3
KRG91762 Soybean plasma membrane 87.66 87.66
Os04t0457800-01 Rice plasma membrane 87.98 87.42
HORVU7Hr1G068990.2 Barley mitochondrion 94.39 87.39
KRH35013 Soybean plasma membrane 87.34 87.34
GSMUA_Achr2P14850_001 Banana plastid 87.34 87.2
VIT_18s0164g00070.t01 Wine grape plasma membrane 87.02 87.02
GSMUA_AchrUn_... Banana plasma membrane 87.5 86.67
KRH70218 Soybean endoplasmic reticulum 86.54 86.54
GSMUA_Achr10P... Banana plasma membrane 86.7 86.42
GSMUA_Achr7P11620_001 Banana plasma membrane 88.94 86.31
Solyc04g072570.2.1 Tomato extracellular 86.22 85.53
Bra003911.1-P Field mustard plasma membrane 77.4 84.59
AT1G34210.1 Thale cress plasma membrane 85.1 84.55
CDY36679 Canola plasma membrane 83.97 84.38
Zm00001d049480_P005 Maize plasma membrane 88.78 84.07
CDX96350 Canola plasma membrane 84.13 84.0
CDX72833 Canola plasma membrane 83.97 83.84
AT1G71830.1 Thale cress plasma membrane 83.49 83.36
PGSC0003DMT400032797 Potato cytosol, plasma membrane, plastid 68.27 82.24
PGSC0003DMT400045607 Potato cytosol, plasma membrane, plastid 69.07 82.1
Bra037006.1-P Field mustard mitochondrion 62.98 82.05
PGSC0003DMT400070819 Potato plasma membrane 83.33 82.02
KRH10503 Soybean cytosol, plastid 61.38 81.84
Solyc10g047140.1.1 Tomato plasma membrane 79.01 80.16
Solyc01g104970.2.1 Tomato plasma membrane 78.85 79.87
Bra016112.1-P Field mustard plasma membrane 77.56 79.74
KRH43924 Soybean plasma membrane 78.21 79.22
CDY46116 Canola plasma membrane 76.44 79.1
CDX72403 Canola plasma membrane 76.44 79.1
CDX68975 Canola plasma membrane 77.4 78.54
CDY45042 Canola plasma membrane 76.92 78.43
CDX75351 Canola plasma membrane 77.4 78.41
VIT_12s0055g01160.t01 Wine grape plasma membrane 76.6 78.36
Bra034562.1-P Field mustard plasma membrane 70.83 78.09
Bra011439.1-P Field mustard plasma membrane 65.06 78.08
GSMUA_Achr10P... Banana mitochondrion 90.38 77.79
VIT_12s0055g01280.t01 Wine grape plasma membrane 62.34 75.83
AT4G33430.2 Thale cress plasma membrane 78.37 73.87
KRH58311 Soybean plasma membrane 73.08 73.43
AT2G13790.1 Thale cress plasma membrane 72.28 72.74
CDY28301 Canola plasma membrane 46.15 72.54
Bra032128.1-P Field mustard cytosol 56.25 72.07
CDX68299 Canola plasma membrane 81.09 71.37
CDX93126 Canola plasma membrane 69.55 71.15
CDX89615 Canola plasma membrane 69.39 70.98
CDY48450 Canola plasma membrane 68.75 70.1
Bra041056.1-P Field mustard plasma membrane 58.01 70.02
AT2G13800.3 Thale cress plasma membrane 67.15 69.72
Bra032125.1-P Field mustard plasma membrane 58.49 67.97
VIT_12s0055g01150.t01 Wine grape plasma membrane 66.19 67.93
CDX71165 Canola plasma membrane 66.35 66.99
KRH42193 Soybean plasma membrane 65.22 66.07
CDY39690 Canola cytosol 64.26 66.06
KRH58312 Soybean plasma membrane 64.26 65.2
Bra013136.1-P Field mustard plasma membrane 55.45 59.86
Os06t0225300-01 Rice plasma membrane 58.65 59.42
Os02t0283800-01 Rice plasma membrane 52.24 53.71
Os01t0171000-01 Rice plasma membrane 53.21 52.87
VIT_12s0121g00310.t01 Wine grape cytosol, mitochondrion 25.16 52.86
Os06t0274500-01 Rice extracellular 51.12 49.84
Os11t0607200-01 Rice plasma membrane 47.6 48.85
Os02t0236100-01 Rice plasma membrane 46.63 46.94
Os08t0442700-01 Rice plasma membrane 50.8 46.76
Os01t0247500-01 Rice golgi, plasma membrane 19.87 35.43
Os02t0728500-01 Rice extracellular, plasma membrane 17.95 34.57
Os03t0266800-01 Rice plasma membrane 32.85 34.51
Os12t0638100-01 Rice plasma membrane 32.21 32.01
Protein Annotations
KEGG:04150+2.7.11.1KEGG:04151+2.7.11.1KEGG:04714+2.7.11.1KEGG:04926+2.7.11.1KEGG:05165+2.7.11.1Gene3D:1.10.510.10
MapMan:11.3.2.1.2MapMan:18.4.1.2Gene3D:3.30.200.20Gene3D:3.80.10.10EntrezGene:4344785EMBL:AB188247
EMBL:AK103038ProteinID:BAD05545.1ProteinID:BAF23022.1ProteinID:BAT04050.1ProteinID:EEE68130.1GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004674GO:GO:0004675GO:GO:0004713
GO:GO:0004871GO:GO:0005102GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0005623GO:GO:0005886GO:GO:0006464GO:GO:0006468GO:GO:0007154GO:GO:0007165
GO:GO:0007166GO:GO:0007178GO:GO:0008150GO:GO:0008152GO:GO:0009719GO:GO:0009729
GO:GO:0009742GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301GO:GO:0016310
GO:GO:0016740GO:GO:0018108GO:GO:0019538GO:GO:0038023GO:GO:0042803GO:GO:0043531
InterPro:IPR000719InterPro:IPR001611InterPro:IPR032675InterPro:Kinase-like_dom_sfInterPro:LRR_N_plant-typInterPro:LRR_dom_sf
InterPro:Leu-rich_rptEnsemblPlantsGene:Os08g0174700EnsemblPlants:Os08t0174700-01PFAM:PF00069PFAM:PF00560PFAM:PF08263
ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR27001PANTHER:PTHR27001:SF494InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BSUniProt:Q6Z4U4InterPro:SERKSMART:SM00220SUPFAM:SSF52058SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI000022F289RefSeq:XP_015649858.1SEG:seg
Description
somatic embryogenesis receptor-like kinase 1, somatic embryogenesis receptor kinase 1, BRI1-associated receptor kinase 1, BTH-induced SERK1, benzothiadiazole-induced SERK1, bri1-associated receptor kinase 1 (BAK1) homologue 1Similar to SERK1 (Fragment). (Os08t0174700-01)
Coordinates
chr8:+:4344171..4350465
Molecular Weight (calculated)
68705.5 Da
IEP (calculated)
6.210
GRAVY (calculated)
-0.167
Length
624 amino acids
Sequence
(BLAST)
001: MAAHRWAVWA VLLLRLLVPA ARVLANMEGD ALHSLRTNLV DPNNVLQSWD PTLVNPCTWF HVTCNNDNSV IRVDLGNAAL SGTLVPQLGQ LKNLQYLELY
101: SNNISGTIPS ELGNLTNLVS LDLYLNNFTG PIPDSLGNLL KLRFLRLNNN SLSGSIPKSL TAITALQVLD LSNNNLSGEV PSTGSFSLFT PISFANNPSL
201: CGPGTTKPCP GAPPFSPPPP YNPPTPVQSP GSSSSTGAIA GGVAAGAALL FAIPAIGFAW YRRRKPQEHF FDVPAEEDPE VHLGQLKRFS LRELQVATDT
301: FSNKNILGRG GFGKVYKGRL ADGSLVAVKR LKEERTPGGE LQFQTEVEMI SMAVHRNLLR LRGFCMTPTE RLLVYPYMAN GSVASRLRER PPSEPPLDWR
401: TRRRIALGSA RGLSYLHDHC DPKIIHRDVK AANILLDEDF EAVVGDFGLA KLMDYKDTHV TTAVRGTIGH IAPEYLSTGK SSEKTDVFGY GIMLLELITG
501: QRAFDLARLA NDDDVMLLDW VKGLLKEKRL EMLVDPDLQS NYIDVEVESL IQVALLCTQG SPTERPKMAE VVRMLEGDGL AERWEEWQKI EVVRQEVELG
601: PHRNSEWIVD STDNLHAVEL SGPR
Best Arabidopsis Sequence Match ( AT1G34210.2 )
(BLAST)
001: MGRKKFEAFG FVCLISLLLL FNSLWLASSN MEGDALHSLR ANLVDPNNVL QSWDPTLVNP CTWFHVTCNN ENSVIRVDLG NADLSGQLVP QLGQLKNLQY
101: LELYSNNITG PVPSDLGNLT NLVSLDLYLN SFTGPIPDSL GKLFKLRFLR LNNNSLTGPI PMSLTNIMTL QVLDLSNNRL SGSVPDNGSF SLFTPISFAN
201: NLDLCGPVTS RPCPGSPPFS PPPPFIPPPI VPTPGGYSAT GAIAGGVAAG AALLFAAPAL AFAWWRRRKP QEFFFDVPAE EDPEVHLGQL KRFSLRELQV
301: ATDSFSNKNI LGRGGFGKVY KGRLADGTLV AVKRLKEERT PGGELQFQTE VEMISMAVHR NLLRLRGFCM TPTERLLVYP YMANGSVASC LRERPPSQLP
401: LAWSIRQQIA LGSARGLSYL HDHCDPKIIH RDVKAANILL DEEFEAVVGD FGLARLMDYK DTHVTTAVRG TIGHIAPEYL STGKSSEKTD VFGYGIMLLE
501: LITGQRAFDL ARLANDDDVM LLDWVKGLLK EKKLEMLVDP DLQSNYTEAE VEQLIQVALL CTQSSPMERP KMSEVVRMLE GDGLAEKWDE WQKVEVLRQE
601: VELSSHPTSD WILDSTDNLH AMELSGPR
Arabidopsis Description
SERK2Somatic embryogenesis receptor kinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIC7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.