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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • plasma membrane 6
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69430
CDX70708
CDX72702
CDX85492
CDX90332
CDY07991
CDY12143
CDY16992
CDY38092
CDY38095
CDY41977
CDY53185
CDY66903
CDY66904

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G13790.1 CDX72702 AT4G39400.1 17600708
AT2G13790.1 CDX90332 AT4G39400.1 17600708
AT2G13790.1 CDY12143 AT4G39400.1 17600708
AT2G13790.1 CDY41977 AT4G39400.1 17600708
AT2G13790.1 CDY53185 AT4G39400.1 17600708
AT2G13790.1 CDY66903 AT4G39400.1 17600708
AT2G13790.1 CDY66904 AT4G39400.1 17600708
AT2G13790.1 CDX69430 AT5G48380.1 19616764
AT2G13790.1 CDX70708 AT5G48380.1 19616764
AT2G13790.1 CDX85492 AT5G48380.1 19616764
AT2G13790.1 CDY07991 AT5G48380.1 19616764
AT2G13790.1 CDY16992 AT5G48380.1 19616764
AT2G13790.1 CDY38092 AT5G48380.1 19616764
AT2G13790.1 CDY38095 AT5G48380.1 19616764
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra041056.1-P Field mustard plasma membrane 82.36 98.45
CDY48450 Canola plasma membrane 94.66 95.59
AT2G13790.1 Thale cress plasma membrane 80.26 80.0
CDX89615 Canola plasma membrane 77.35 78.36
CDX93126 Canola plasma membrane 76.86 77.87
AT2G13800.3 Thale cress plasma membrane 73.46 75.54
PGSC0003DMT400032797 Potato cytosol, plasma membrane, plastid 62.62 74.71
CDY46116 Canola plasma membrane 72.49 74.3
CDX75351 Canola plasma membrane 73.95 74.19
CDY45042 Canola plasma membrane 73.46 74.18
CDX68975 Canola plasma membrane 73.79 74.15
CDX72403 Canola plasma membrane 72.33 74.13
PGSC0003DMT400045607 Potato cytosol, plasma membrane, plastid 62.62 73.71
Solyc10g047140.1.1 Tomato plasma membrane 70.06 70.41
Solyc01g104970.2.1 Tomato plasma membrane 70.06 70.29
VIT_12s0055g01160.t01 Wine grape plasma membrane 69.26 70.16
CDY39690 Canola cytosol 68.61 69.85
GSMUA_Achr7P17210_001 Banana cytosol 55.34 69.37
VIT_12s0055g01280.t01 Wine grape plasma membrane 57.28 69.01
CDY36679 Canola plasma membrane 68.77 68.44
CDX72833 Canola plasma membrane 68.61 67.84
CDX96350 Canola plasma membrane 68.61 67.84
KRH58311 Soybean plasma membrane 67.96 67.63
CDY28301 Canola plasma membrane 43.2 67.25
TraesCS6D01G186900.2 Wheat plasma membrane 65.21 66.72
GSMUA_Achr10P... Banana plasma membrane 67.31 66.45
Os08t0174700-01 Rice plasma membrane 66.99 66.35
TraesCS6A01G203600.2 Wheat cytosol 65.37 66.34
GSMUA_Achr2P14850_001 Banana plastid 66.67 65.92
TraesCS7D01G291200.3 Wheat plasma membrane 66.18 65.86
TraesCS7A01G293300.3 Wheat plasma membrane 66.18 65.76
EES12285 Sorghum plasma membrane 66.02 65.59
GSMUA_AchrUn_... Banana plasma membrane 66.83 65.56
EES07030 Sorghum plasma membrane 66.18 65.34
KXG24562 Sorghum plasma membrane 66.67 65.29
TraesCS7B01G182300.1 Wheat plasma membrane 65.7 65.27
TraesCS2B01G340700.1 Wheat plasma membrane 66.18 65.23
Zm00001d016928_P010 Maize plasma membrane 66.02 65.18
TraesCS2A01G343100.1 Wheat mitochondrion, plasma membrane 66.02 65.07
Zm00001d025580_P001 Maize plasma membrane 65.37 64.95
TraesCS2D01G321400.1 Wheat mitochondrion 65.86 64.91
Os04t0457800-01 Rice plasma membrane 65.86 64.81
Zm00001d050868_P004 Maize plasma membrane 65.21 64.69
TraesCS6B01G223700.3 Wheat plasma membrane 65.7 64.65
HORVU6Hr1G049080.7 Barley plasma membrane 65.7 64.65
Zm00001d024430_P002 Maize plasma membrane 66.67 64.58
GSMUA_Achr7P11620_001 Banana plasma membrane 66.99 64.39
Zm00001d049480_P005 Maize plasma membrane 65.7 61.61
HORVU7Hr1G068990.2 Barley mitochondrion 66.34 60.83
KRH42193 Soybean plasma membrane 60.52 60.71
KRH58312 Soybean plasma membrane 59.55 59.84
HORVU2Hr1G080020.6 Barley cytosol 66.02 57.63
GSMUA_Achr10P... Banana mitochondrion 67.48 57.52
CDX68299 Canola plasma membrane 65.7 57.26
CDY28194 Canola cytosol 27.99 56.17
Os06t0225300-01 Rice plasma membrane 52.1 52.27
CDX85768 Canola plasma membrane 49.51 50.08
CDY40089 Canola plasma membrane 49.51 50.08
CDY61508 Canola cytosol 39.81 48.52
CDY08807 Canola plasma membrane 47.73 48.52
CDY55159 Canola extracellular, plasma membrane, vacuole 47.73 48.52
CDY44608 Canola cytosol 39.64 48.32
CDY48073 Canola plasma membrane 49.51 47.81
CDX69484 Canola plasma membrane 48.87 47.63
CDX83534 Canola plasma membrane 49.19 47.5
CDY00320 Canola endoplasmic reticulum 1.29 47.06
CDY26481 Canola plasma membrane 47.9 46.47
CDY41531 Canola cytosol 42.56 45.42
CDX84436 Canola cytosol 42.56 45.42
CDY39685 Canola plasma membrane 46.6 45.21
CDY65182 Canola plasma membrane 46.44 45.05
CDY61461 Canola golgi, plasma membrane 46.28 45.04
CDY46185 Canola golgi, plasma membrane 46.28 44.97
CDX72249 Canola plasma membrane 45.79 44.43
CDX77614 Canola plasma membrane 43.04 43.32
CDY39449 Canola plasma membrane 42.88 43.09
CDY39211 Canola plasma membrane 39.64 42.31
CDX70667 Canola endoplasmic reticulum, golgi 48.38 41.53
CDX78667 Canola golgi, plasma membrane 48.22 41.22
CDX68670 Canola plasma membrane 39.48 40.67
CDX88452 Canola plasma membrane, vacuole 20.23 35.61
CDY52435 Canola plasma membrane, vacuole 19.9 35.04
CDX84346 Canola plasma membrane 30.74 32.53
CDY00321 Canola plasma membrane 30.58 32.36
CDX84187 Canola plasma membrane 30.1 31.58
CDY31708 Canola plasma membrane 29.94 31.52
CDX84610 Canola plasma membrane 29.77 30.98
CDX79610 Canola plasma membrane 29.77 30.98
CDY16762 Canola plasma membrane 29.94 30.73
CDX87267 Canola plasma membrane 29.45 30.28
CDY32113 Canola plasma membrane 28.64 30.1
CDY40456 Canola plasma membrane 28.8 29.82
CDY67608 Canola cytosol, mitochondrion, nucleus 2.27 17.5
CDX68667 Canola cytosol, mitochondrion, nucleus 2.27 17.5
Protein Annotations
KEGG:04150+2.7.11.1KEGG:04151+2.7.11.1KEGG:04714+2.7.11.1KEGG:04926+2.7.11.1KEGG:05165+2.7.11.1Gene3D:1.10.510.10
MapMan:11.3.2.1.2MapMan:18.4.1.2Gene3D:3.30.200.20Gene3D:3.80.10.10GO:A0A078C2T0EnsemblPlants:CDX71165
ProteinID:CDX71165ProteinID:CDX71165.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672
GO:GO:0004871GO:GO:0005102GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0006464
GO:GO:0006468GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016301GO:GO:0016740GO:GO:0019199GO:GO:0019538GO:GO:0038023EnsemblPlantsGene:GSBRNA2T00144675001
InterPro:IPR000719InterPro:IPR032675InterPro:Kinase-like_dom_sfInterPro:LRR_N_plant-typInterPro:LRR_dom_sfPFAM:PF00069
PFAM:PF08263ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR27001PANTHER:PTHR27001:SF1
InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSInterPro:SERKSMART:SM00220SUPFAM:SSF52058SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0004EDEB55SEG:seg:
Description
BnaC07g04440D
Coordinates
chrLK031792:+:311773..315416
Molecular Weight (calculated)
68311.0 Da
IEP (calculated)
5.220
GRAVY (calculated)
-0.165
Length
618 amino acids
Sequence
(BLAST)
001: MGFAFGKMEQ QGPSLRSLIS LILLFVLLLR AAGNPEGDAL YELKKSLVDD PNNVLQSWDA TLVSPCTWFH ITCNSENSVI RLDLMQIYLD NSCHSFVIFQ
101: ACSTCTELYS NNITGGIPEE LGDLAELVSL DLYMNKISGP IPSSLGKLEK LKFLRLNNNK LSGEIPRSLT NVSLQVLDIA NNGLSGDIPV NGSFTLFTPI
201: SFANNSLRPL PDPPSTSNSP PQPPPGKKTT TSIAIGAAAG AAILCAGPAI ALAWWLRSKA QDRFVDIPGE EDPEVHLGQL RRFSLRELLV ATDNFSNKNV
301: LGRGGFGKVY KGRLANGKLV AVKRLKEERT MGGELQFQTE VEMISLAVHR NLLRLHGFCM TPTERLLVYP YMSNGSVASC LRESHEGNPA LDWPKRKHIA
401: LGAARGLAYL HDHCDQKIIH RDVKAANILL DENFEAVVGD FGLAKLMNYN ESHVTTAVRG TIGHIAPEYL STGKSSEKTD VFGYGVMLLE LITGQKAFDL
501: ARLANDDDIM LLDWVKEVLK EKKLESLVDA GLEGKYVDKE VEQLIQMALL CTQSSSLERP NMSEVVRMLE GDGLAEKWEE WEKEEMLTND FNYPHADINW
601: LIPESLSHIE NDYPSGPR
Best Arabidopsis Sequence Match ( AT2G13790.1 )
(BLAST)
001: MTSSKMEQRS LLCFLYLLLL FNFTLRVAGN AEGDALTQLK NSLSSGDPAN NVLQSWDATL VTPCTWFHVT CNPENKVTRV DLGNAKLSGK LVPELGQLLN
101: LQYLELYSNN ITGEIPEELG DLVELVSLDL YANSISGPIP SSLGKLGKLR FLRLNNNSLS GEIPMTLTSV QLQVLDISNN RLSGDIPVNG SFSLFTPISF
201: ANNSLTDLPE PPPTSTSPTP PPPSGGQMTA AIAGGVAAGA ALLFAVPAIA FAWWLRRKPQ DHFFDVPAEE DPEVHLGQLK RFTLRELLVA TDNFSNKNVL
301: GRGGFGKVYK GRLADGNLVA VKRLKEERTK GGELQFQTEV EMISMAVHRN LLRLRGFCMT PTERLLVYPY MANGSVASCL RERPEGNPAL DWPKRKHIAL
401: GSARGLAYLH DHCDQKIIHR DVKAANILLD EEFEAVVGDF GLAKLMNYND SHVTTAVRGT IGHIAPEYLS TGKSSEKTDV FGYGVMLLEL ITGQKAFDLA
501: RLANDDDIML LDWVKEVLKE KKLESLVDAE LEGKYVETEV EQLIQMALLC TQSSAMERPK MSEVVRMLEG DGLAERWEEW QKEEMPIHDF NYQAYPHAGT
601: DWLIPYSNSL IENDYPSGPR
Arabidopsis Description
SERK4Somatic embryogenesis receptor kinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKG5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.