CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 1
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68299
CDX69121
CDX72702
CDX72833
CDX74345
CDX75483
CDX76321
CDX90332
CDX91898
CDX96350
CDY02804
CDY07049	plasma membrane
CDY07203
CDY07629	plasma membrane
CDY12143
CDY17529
CDY20508	plasma membrane
CDY23595	plasma membrane
CDY24191	plasma membrane
CDY32716
CDY36679
CDY41977
CDY43996	plasma membrane
CDY51145
CDY53185
CDY60337	plasma membrane
CDY61712	plasma membrane
CDY66903
CDY66904

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39400.1	CDX68299	AT1G71830.1	16473966
AT4G39400.1	CDX72833	AT1G71830.1	16473966
AT4G39400.1	CDX96350	AT1G71830.1	16473966
AT4G39400.1	CDY36679	AT1G71830.1	16473966
AT4G39400.1	CDY07049	AT2G40060.1	23975899
AT4G39400.1	CDY07629	AT2G40060.1	23975899
AT4G39400.1	CDY20508	AT2G40060.1	23975899
AT4G39400.1	CDY60337	AT2G40060.1	23975899
AT4G39400.1	CDY61712	AT2G40060.1	23975899
AT4G39400.1	CDY23595	AT3G13380.1	24064770
AT4G39400.1	CDY24191	AT3G13380.1	24064770
AT4G39400.1	CDY43996	AT3G13380.1	24064770
AT4G39400.1	CDX74345	AT4G00710.1	18653891
AT4G39400.1	CDX91898	AT4G00710.1	18653891
AT4G39400.1	CDY07203	AT4G00710.1	18653891
AT4G39400.1	CDY51145	AT4G00710.1	18653891
AT4G39400.1	CDX69121	AT4G35230.1	18653891
AT4G39400.1	CDX75483	AT4G35230.1	18653891
AT4G39400.1	CDX76321	AT4G35230.1	18653891
AT4G39400.1	CDY17529	AT4G35230.1	18653891
AT4G39400.1	CDX72702	AT4G39400.1	15935775
AT4G39400.1	CDX90332	AT4G39400.1	15935775
AT4G39400.1	CDY12143	AT4G39400.1	15935775
AT4G39400.1	CDY41977	AT4G39400.1	15935775
AT4G39400.1	CDY53185	AT4G39400.1	15935775
AT4G39400.1	CDY66903	AT4G39400.1	15935775
AT4G39400.1	CDY66904	AT4G39400.1	15935775
AT4G39400.1	CDX72702	AT4G39400.1	16473966
AT4G39400.1	CDX90332	AT4G39400.1	16473966
AT4G39400.1	CDY12143	AT4G39400.1	16473966
AT4G39400.1	CDY41977	AT4G39400.1	16473966
AT4G39400.1	CDY53185	AT4G39400.1	16473966
AT4G39400.1	CDY66903	AT4G39400.1	16473966
AT4G39400.1	CDY66904	AT4G39400.1	16473966
AT4G39400.1	CDY02804	AT5G58220.1	15319482
AT4G39400.1	CDY32716	AT5G58220.1	15319482

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24190	Canola	cytosol	14.53	44.81
CDY41977	Canola	plasma membrane	96.0	40.5
CDY53185	Canola	plasma membrane	89.26	39.48
CDX72702	Canola	plasma membrane	89.47	37.64
AT4G39400.1	Thale cress	plasma membrane, vacuole	90.11	35.79
CDY12143	Canola	plasma membrane	78.95	35.05
CDX90332	Canola	plasma membrane	81.05	34.81
GSMUA_Achr6P35950_001	Banana	plasma membrane	63.79	33.74
GSMUA_AchrUn_...	Banana	plasma membrane	55.79	32.96
KRH64131	Soybean	plasma membrane	78.53	31.42
KRH53813	Soybean	plasma membrane	77.05	30.91
VIT_07s0031g01850.t01	Wine grape	plasma membrane	77.68	30.62
PGSC0003DMT400050728	Potato	golgi, plasma membrane, vacuole	75.79	29.85
Solyc04g051510.1.1	Tomato	golgi, plasma membrane, vacuole	75.79	29.83
GSMUA_Achr1P05250_001	Banana	golgi, plasma membrane	51.37	29.72
Zm00001d043634_P001	Maize	plasma membrane	67.16	28.64
EES03532	Sorghum	plasma membrane	67.16	28.48
TraesCS3A01G245000.1	Wheat	plasma membrane	67.16	28.41
TraesCS3D01G246500.1	Wheat	plasma membrane	67.16	28.38
Zm00001d011721_P001	Maize	plasma membrane	66.53	28.16
Os01t0718300-01	Rice	plasma membrane	66.11	28.01
GSMUA_Achr4P08920_001	Banana	plasma membrane, vacuole	52.0	27.97
HORVU3Hr1G068000.2	Barley	plastid	67.37	27.35
TraesCS3B01G275000.1	Wheat	plasma membrane, plastid	67.16	26.5
CDY43996	Canola	plasma membrane	60.0	26.19
CDY23595	Canola	plasma membrane	59.58	25.99
CDY10547	Canola	plasma membrane	60.0	25.86
CDY42373	Canola	plasma membrane	60.21	24.55
CDY17621	Canola	plasma membrane	53.89	22.74
CDY03088	Canola	plasma membrane	53.89	22.54
CDY24191	Canola	cytosol	24.21	21.18
CDX70023	Canola	plasma membrane	37.26	21.17
CDX98990	Canola	plasma membrane	36.84	18.9
HORVU3Hr1G068020.2	Barley	cytosol	33.47	18.88
OQU86764	Sorghum	plasma membrane	30.95	14.8
TraesCS3D01G496100.1	Wheat	plasma membrane	31.37	13.77
TraesCS3B01G550900.1	Wheat	plasma membrane	31.37	13.76
CDX73079	Canola	plasma membrane	31.37	13.29
TraesCS3B01G551200.1	Wheat	plasma membrane	30.11	13.24
CDX96537	Canola	plasma membrane	31.16	13.19
TraesCS3A01G490100.1	Wheat	plasma membrane	22.74	12.07
HORVU3Hr1G068010.1	Barley	plasma membrane	12.63	10.36
Zm00001d014769_P001	Maize	cytosol, extracellular, nucleus	5.68	9.44
CDY16355	Canola	cytosol, plastid, vacuole	5.68	6.49
CDY66377	Canola	cytosol, plastid, vacuole	5.68	6.49
CDY42431	Canola	plasma membrane	5.26	4.73
CDY66903	Canola	extracellular	2.32	2.64
CDY49128	Canola	vacuole	1.05	1.23

Protein Annotations

Gene3D:1.10.510.10	MapMan:11.3.2.1.1	MapMan:18.4.1.10.2	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:A0A078JJK1
UniProt:A0A078JJK1	EnsemblPlants:CDY66904	ProteinID:CDY66904	ProteinID:CDY66904.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00056824001	InterPro:IPR000719
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27000	PANTHER:PTHR27000:SF220	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI0004EDD392	SEG:seg	:

Description

BnaC01g40660DBnaC01g40660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJK1]

Coordinates

chrLK035568:+:2401..3828

Molecular Weight (calculated)

52530.6 Da

IEP (calculated)

6.948

GRAVY (calculated)

-0.250

Length

475 amino acids

Sequence
(BLAST)

001: MSALTMLTEI DLSNNLLSGP IPEMGQFETF PPAKFLNNSG LCGYPLPKCG PANGERDAHH SRSDGRKQPS LAGSIAMGLL FSLVCIFGLV LLGREMRKRG
101: REREAALEMY AEGNGNSGDR TAYNTDWKMT GVKEALSINL AAFEKPLRKL TFADLLQATN GFHNDSMIGS GGFGDVYKAV LKDGSAVAIK KLIQISGQGD
201: REFMAEMETI GKIKHRNLVP LLGYCKVGEE RLLVYEFMKY GSLEDVLHDP KKAGVKLNWS MRRKIAIGSA RGLAFLHHNC IPHIIHRDMK SSNVLLDENM
301: EARVSDFGMA RLMSAMDTHL SVSTLAGTPG YVPPEYYQSF RCSKKGDVYS YGVVLLELLT GKRPTDSPDF GDNNLVGWVK QHAKLRVSDV FDQEIMKEDP
401: ALENELIQHL KVAMACLDDR AWKRPTMIQV MAKFKEIQAE SGIDSQSTIG SIEDGGFSTI EMVDMSIKEV PEGKF

Best Arabidopsis Sequence Match ( AT1G55610.1 )
(BLAST)

0001: MKQRWLLVLI LCFFTTSLVM GIHGKHLIND DFNETALLLA FKQNSVKSDP NNVLGNWKYE SGRGSCSWRG VSCSDDGRIV GLDLRNSGLT GTLNLVNLTA
0101: LPNLQNLYLQ GNYFSSGGDS SGSDCYLQVL DLSSNSISDY SMVDYVFSKC SNLVSVNISN NKLVGKLGFA PSSLQSLTTV DLSYNILSDK IPESFISDFP
0201: ASLKYLDLTH NNLSGDFSDL SFGICGNLTF FSLSQNNLSG DKFPITLPNC KFLETLNISR NNLAGKIPNG EYWGSFQNLK QLSLAHNRLS GEIPPELSLL
0301: CKTLVILDLS GNTFSGELPS QFTACVWLQN LNLGNNYLSG DFLNTVVSKI TGITYLYVAY NNISGSVPIS LTNCSNLRVL DLSSNGFTGN VPSGFCSLQS
0401: SPVLEKILIA NNYLSGTVPM ELGKCKSLKT IDLSFNELTG PIPKEIWMLP NLSDLVMWAN NLTGTIPEGV CVKGGNLETL ILNNNLLTGS IPESISRCTN
0501: MIWISLSSNR LTGKIPSGIG NLSKLAILQL GNNSLSGNVP RQLGNCKSLI WLDLNSNNLT GDLPGELASQ AGLVMPGSVS GKQFAFVRNE GGTDCRGAGG
0601: LVEFEGIRAE RLERLPMVHS CPATRIYSGM TMYTFSANGS MIYFDISYNA VSGFIPPGYG NMGYLQVLNL GHNRITGTIP DSFGGLKAIG VLDLSHNNLQ
0701: GYLPGSLGSL SFLSDLDVSN NNLTGPIPFG GQLTTFPVSR YANNSGLCGV PLRPCGSAPR RPITSRIHAK KQTVATAVIA GIAFSFMCFV MLVMALYRVR
0801: KVQKKEQKRE KYIESLPTSG SCSWKLSSVP EPLSINVATF EKPLRKLTFA HLLEATNGFS AETMVGSGGF GEVYKAQLRD GSVVAIKKLI RITGQGDREF
0901: MAEMETIGKI KHRNLVPLLG YCKVGEERLL VYEYMKWGSL ETVLHEKSSK KGGIYLNWAA RKKIAIGAAR GLAFLHHSCI PHIIHRDMKS SNVLLDEDFE
1001: ARVSDFGMAR LVSALDTHLS VSTLAGTPGY VPPEYYQSFR CTAKGDVYSY GVILLELLSG KKPIDPGEFG EDNNLVGWAK QLYREKRGAE ILDPELVTDK
1101: SGDVELFHYL KIASQCLDDR PFKRPTMIQL MAMFKEMKAD TEEDESLDEF SLKETPLVEE SRDKEP

Arabidopsis Description

BRL1Serine/threonine-protein kinase BRI1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZWC8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.