CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 1
plasma membrane 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03399
CDY34331
CDY70063

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07280.1	CDY03399	AT4G24972.1	18250314
AT5G07280.1	CDY34331	AT4G24972.1	18250314
AT5G07280.1	CDY70063	AT4G24973.1	18250314

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98990	Canola	plasma membrane	90.43	81.64
Bra009277.1-P	Field mustard	plasma membrane	99.28	67.32
AT5G07280.1	Thale cress	plasma membrane	75.36	52.85
TraesCS3D01G418600.1	Wheat	plasma membrane, plastid	28.71	44.53
KRG91463	Soybean	plasma membrane	66.15	43.61
VIT_16s0100g00710.t01	Wine grape	plasma membrane	67.7	43.51
KRH35354	Soybean	plasma membrane	65.79	43.34
PGSC0003DMT400037057	Potato	plasma membrane	64.11	42.14
Solyc03g026040.2.1	Tomato	plasma membrane	60.53	40.77
CDY66904	Canola	cytosol, peroxisome, plasma membrane	21.17	37.26
GSMUA_Achr8P00900_001	Banana	plasma membrane	41.51	34.53
CDY24190	Canola	cytosol	5.86	31.82
GSMUA_Achr5P25270_001	Banana	plasma membrane	30.5	30.18
TraesCS2D01G297600.2	Wheat	plasma membrane	43.66	29.06
TraesCS6A01G166200.1	Wheat	plasma membrane	41.03	28.87
Os01t0917500-01	Rice	plasma membrane	44.5	28.75
EES01957	Sorghum	plasma membrane	43.9	28.38
TraesCS2D01G034200.1	Wheat	plasma membrane	44.5	28.38
TraesCS3D01G311500.1	Wheat	plasma membrane	44.38	28.3
TraesCS3A01G423400.1	Wheat	plasma membrane	44.14	28.15
TraesCS3B01G458900.1	Wheat	plasma membrane	44.02	28.09
HORVU3Hr1G093530.7	Barley	plasma membrane	44.14	28.08
Zm00001d042362_P001	Maize	plasma membrane	44.02	27.9
CDY53185	Canola	plasma membrane	35.65	27.75
TraesCS6B01G193600.1	Wheat	plasma membrane	42.58	27.49
TraesCS6D01G154800.2	Wheat	mitochondrion, nucleus, plasma membrane, plastid	43.54	27.33
CDY12143	Canola	plasma membrane	34.81	27.2
HORVU6Hr1G033670.5	Barley	plasma membrane	42.7	27.19
CDY41977	Canola	plasma membrane	36.24	26.91
CDY10547	Canola	plasma membrane	35.41	26.86
CDY17621	Canola	plasma membrane	36.12	26.82
CDY03088	Canola	plasma membrane	36.0	26.5
EES06446	Sorghum	plasma membrane	38.52	26.48
CDY43996	Canola	plasma membrane	34.45	26.47
CDY23595	Canola	plasma membrane	34.33	26.35
CDY24191	Canola	cytosol	17.11	26.34
CDX72702	Canola	plasma membrane	35.53	26.31
CDX90332	Canola	plasma membrane	34.09	25.77
Zm00001d015853_P001	Maize	plasma membrane	39.59	25.76
CDY42373	Canola	plasma membrane	35.77	25.67
Os02t0194400-02	Rice	plastid	40.91	24.2
CDY16355	Canola	cytosol, plastid, vacuole	11.48	23.08
CDY66377	Canola	cytosol, plastid, vacuole	11.48	23.08
CDX73079	Canola	plasma membrane	29.78	22.21
CDX96537	Canola	plasma membrane	29.67	22.1
CDY66903	Canola	extracellular	11.0	22.06
Zm00001d012048_P001	Maize	plasma membrane	22.85	21.61
CDY42431	Canola	plasma membrane	10.29	16.29
CDY49128	Canola	vacuole	6.46	13.24

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.10.2	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:A0A078C4X7	EnsemblPlants:CDX70023
ProteinID:CDX70023	ProteinID:CDX70023.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00136120001
InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560	PFAM:PF07714	PFAM:PF08263	PFAM:PF13516
PFAM:PF13855	PRINTS:PR00019	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS51450
PANTHER:PTHR27000	PANTHER:PTHR27000:SF106	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SMART:SM00365
SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0004EDD953	SEG:seg	:	:	:

Description

BnaA10g23720D

Coordinates

chrLK031790:+:2744992..2748693

Molecular Weight (calculated)

90192.2 Da

IEP (calculated)

6.949

GRAVY (calculated)

0.054

Length

836 amino acids

Sequence
(BLAST)

001: MAFLRASTFL FLLFISVSSA STSERSSLLS FKASLETSPS PSPLSSWNLS SPSPCTWLGV TCRFGKVNSL SLPSLSLKGN LPPSLFSSLP FLTALDLSDN
101: SLSGLIPPQL GHLKHLQTLS LSGNSLTGPL PRYLPPEIGN AVSLKRLVLS DNQLRGVIPR EIGKLTSLSF LNLNSNELQG EIPTELGDCT SLTTLDLGKN
201: NLQGEIPMPD LSFLQHRGIF DLSHNGLTGP IPEELGDCVV VVEILLSNNH LSGEIPSSLS RLTNLTNLDL SGNSLTGSIP EEIGHSPKLQ GLNLANNHLS
301: GHIPKSFGLL GSLVKLNLSK NNLGGSLPAS LGNLKELTHM DLSFNKLTGE LPSELSKMLN LVGIYIQQNR LSGVNLLTGT LPGSLGNLSY LTNLDLHQNH
401: FTGGIPSELG SLMQLELLDV SENNISGDIP TQICGLTSLR FLNLAKNRLQ GEVPSEGVCN DPSKALFSGN KADEKTLLSA WGLSGIVIGT MIIVLAALFS
501: LRRYVTRRRV NDPEESFVDD QNLYFLSGSR SREPLSINVA MFEQPLLKVS LADIVEGTDR FCKKNIIGDG GFGTVYKACL HGGKTVAVKK LSDAKTQGNR
601: EFMAEMETLG KVKHPNLVSL IGYCSFSEEK LLVYEYMVNG SLDHWLRNQT GILDVLDWSK RLKIAVGAAR GLAFLHHGFI PHIIHRDIKA SNILLDSEFE
701: PKVADFGLAR LISACETHVS TIIAGTFGYI PPEYGQSARA TTKGDVYSFG VILLELVTGK EPTGPDFKES EGGNLVGWVV QKINKGRAVD VLDPLVVAAG
801: FKQAMLRVLQ IAVHCIAATP ASRPTMLDVL KSLKEL

Best Arabidopsis Sequence Match ( AT5G07280.1 )
(BLAST)

0001: MAFLTALFLF LFFSFSSSAI VDLSSETTSL ISFKRSLENP SLLSSWNVSS SASHCDWVGV TCLLGRVNSL SLPSLSLRGQ IPKEISSLKN LRELCLAGNQ
0101: FSGKIPPEIW NLKHLQTLDL SGNSLTGLLP RLLSELPQLL YLDLSDNHFS GSLPPSFFIS LPALSSLDVS NNSLSGEIPP EIGKLSNLSN LYMGLNSFSG
0201: QIPSEIGNIS LLKNFAAPSC FFNGPLPKEI SKLKHLAKLD LSYNPLKCSI PKSFGELHNL SILNLVSAEL IGLIPPELGN CKSLKSLMLS FNSLSGPLPL
0301: ELSEIPLLTF SAERNQLSGS LPSWMGKWKV LDSLLLANNR FSGEIPHEIE DCPMLKHLSL ASNLLSGSIP RELCGSGSLE AIDLSGNLLS GTIEEVFDGC
0401: SSLGELLLTN NQINGSIPED LWKLPLMALD LDSNNFTGEI PKSLWKSTNL MEFTASYNRL EGYLPAEIGN AASLKRLVLS DNQLTGEIPR EIGKLTSLSV
0501: LNLNANMFQG KIPVELGDCT SLTTLDLGSN NLQGQIPDKI TALAQLQCLV LSYNNLSGSI PSKPSAYFHQ IEMPDLSFLQ HHGIFDLSYN RLSGPIPEEL
0601: GECLVLVEIS LSNNHLSGEI PASLSRLTNL TILDLSGNAL TGSIPKEMGN SLKLQGLNLA NNQLNGHIPE SFGLLGSLVK LNLTKNKLDG PVPASLGNLK
0701: ELTHMDLSFN NLSGELSSEL STMEKLVGLY IEQNKFTGEI PSELGNLTQL EYLDVSENLL SGEIPTKICG LPNLEFLNLA KNNLRGEVPS DGVCQDPSKA
0801: LLSGNKELCG RVVGSDCKIE GTKLRSAWGI AGLMLGFTII VFVFVFSLRR WAMTKRVKQR DDPERMEESR LKGFVDQNLY FLSGSRSREP LSINIAMFEQ
0901: PLLKVRLGDI VEATDHFSKK NIIGDGGFGT VYKACLPGEK TVAVKKLSEA KTQGNREFMA EMETLGKVKH PNLVSLLGYC SFSEEKLLVY EYMVNGSLDH
1001: WLRNQTGMLE VLDWSKRLKI AVGAARGLAF LHHGFIPHII HRDIKASNIL LDGDFEPKVA DFGLARLISA CESHVSTVIA GTFGYIPPEY GQSARATTKG
1101: DVYSFGVILL ELVTGKEPTG PDFKESEGGN LVGWAIQKIN QGKAVDVIDP LLVSVALKNS QLRLLQIAML CLAETPAKRP NMLDVLKALK EI

Arabidopsis Description

EMS1Leucine-rich repeat receptor protein kinase EMS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYN8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.