CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70023
CDX98990

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24972.1	CDX70023	AT5G07280.1	18250314
AT4G24972.1	CDX98990	AT5G07280.1	18250314

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013852.1-P	Field mustard	golgi, plasma membrane	49.47	81.29
CDY34331	Canola	plasma membrane	49.47	80.81
AT4G24972.1	Thale cress	plasma membrane	41.64	66.48
CDY01265	Canola	extracellular	13.88	61.9
PGSC0003DMT400081204	Potato	cytosol	27.4	57.04
GSMUA_Achr6P06090_001	Banana	plastid	12.46	52.24
KRH41105	Soybean	cytosol	21.35	50.85
GSMUA_Achr9P01220_001	Banana	cytosol	19.22	50.0
CDX84078	Canola	cytosol, extracellular, mitochondrion, plastid	14.95	45.65
Solyc03g097530.2.1	Tomato	extracellular, plasma membrane	28.11	44.89
CDX73256	Canola	extracellular	26.69	42.61
CDY26905	Canola	extracellular	25.98	41.48
TraesCS2D01G080200.1	Wheat	extracellular	24.56	37.1
TraesCS2A01G082300.1	Wheat	extracellular	24.2	36.56
HORVU1Hr1G026400.6	Barley	mitochondrion	19.93	35.44
CDY01257	Canola	cytosol, extracellular, plastid	16.73	35.07
HORVU7Hr1G058610.2	Barley	cytosol	10.32	34.52
TraesCS2B01G096400.1	Wheat	extracellular	22.78	34.41
TraesCS1A01G118900.1	Wheat	endoplasmic reticulum, plastid	23.84	30.45
TraesCS1D01G119800.1	Wheat	plastid	23.84	30.45
TraesCS1B01G138400.1	Wheat	endoplasmic reticulum, plastid	23.84	30.18
Os12t0472500-01	Rice	plasma membrane	24.2	30.09
OQU79047	Sorghum	plastid	23.13	29.95
Zm00001d023681_P001	Maize	extracellular	22.78	29.91

Protein Annotations

EnsemblPlants:CDY03399	EnsemblPlantsGene:GSBRNA2T00116038001	PANTHER:PTHR33184	PANTHER:PTHR33184:SF2	ProteinID:CDY03399	ProteinID:CDY03399.1
SEG:seg	UniParc:UPI0004EE4DB5	MapMan:11.10.1.7.1	:	:	:

Description

BnaC01g16830D

Coordinates

chrLK031943:-:199032..201440

Molecular Weight (calculated)

31858.5 Da

IEP (calculated)

9.716

GRAVY (calculated)

-0.035

Length

281 amino acids

Sequence
(BLAST)

001: MFWPILRFCL AFFYPTAFNK TYQSIFGLDT SVVVCNVKHR RESSLTVSFR LPYTHFLSLY PFFVFYLGDT TSSHSQREVV ERRTSKKIFG EKDRVRDSSS
101: ALVVYTSVLM SRRRLLLSAT ILSYLLHGMA LVSVVASGVE EVRDNVDLTK TTTLATTSTH RKMLRLSHAE TRVEPDRIGE KCKKSDIVVN QAATEPMPNG
201: IPGYTVEITN QCMSGCNISR IHVSCGWFSS VKLVNPRVFK RIHYDDCLVN NGKPLPYGST LSFHYANTFP YRLAVAFVTC S

Best Arabidopsis Sequence Match ( AT4G24972.1 )
(BLAST)

001: MNRRRLLVSA TLLSYLLYGM ALVSVEASGG EKLRDNLDLT KTTTSSPSIS HRKMLLLSPG TGKTERSVEP ERIGEKCKST DIVVNQAVTE PMPNGIPGYM
101: VEITNQCMSG CIISRIHINC GWFSSAKLIN PRVFKRIHYD DCLVNNGKPL PFGSTLSFHY ANTFPYHLSV AFVTCA

Arabidopsis Description

TPD1TPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178V0R1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.