Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010173.1-P | Field mustard | extracellular | 93.75 | 93.75 |
| CDY26905 | Canola | extracellular | 93.75 | 93.75 |
| CDY01265 | Canola | extracellular | 31.82 | 88.89 |
| AT1G32583.1 | Thale cress | extracellular | 66.48 | 65.36 |
| CDX84078 | Canola | cytosol, extracellular, mitochondrion, plastid | 31.82 | 60.87 |
| GSMUA_AchrUn_... | Banana | cytosol | 36.93 | 60.19 |
| GSMUA_Achr8P26310_001 | Banana | cytosol | 39.77 | 56.45 |
| CDY01257 | Canola | cytosol, extracellular, plastid | 35.8 | 47.01 |
| VIT_00s0194g00170.t01 | Wine grape | extracellular | 43.75 | 44.25 |
| CDY34331 | Canola | plasma membrane | 40.91 | 41.86 |
| HORVU7Hr1G058610.2 | Barley | cytosol | 18.18 | 38.1 |
| HORVU1Hr1G026400.6 | Barley | mitochondrion | 32.39 | 36.08 |
| TraesCS2B01G096400.1 | Wheat | extracellular | 37.5 | 35.48 |
| TraesCS2A01G082300.1 | Wheat | extracellular | 36.36 | 34.41 |
| TraesCS2D01G080200.1 | Wheat | extracellular | 36.36 | 34.41 |
| OQU79047 | Sorghum | plastid | 38.64 | 31.34 |
| Os12t0472500-01 | Rice | plasma membrane | 39.77 | 30.97 |
| TraesCS1D01G119800.1 | Wheat | plastid | 37.5 | 30.0 |
| TraesCS1B01G138400.1 | Wheat | endoplasmic reticulum, plastid | 37.5 | 29.73 |
| TraesCS1A01G118900.1 | Wheat | endoplasmic reticulum, plastid | 36.93 | 29.55 |
| Zm00001d023681_P001 | Maize | extracellular | 34.09 | 28.04 |
| CDY03399 | Canola | extracellular, golgi | 42.61 | 26.69 |
Protein Annotations
| EnsemblPlants:CDX73256 | EnsemblPlantsGene:GSBRNA2T00106288001 | PANTHER:PTHR33184 | PANTHER:PTHR33184:SF26 | ProteinID:CDX73256 | ProteinID:CDX73256.1 |
| SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0004EBAFAA | MapMan:11.10.1.7.1 | : |
Description
BnaC05g28500D
Coordinates
chrLK031798:+:171206..173238
Molecular Weight (calculated)
19472.3 Da
IEP (calculated)
5.724
GRAVY (calculated)
0.100
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHFYQFQQQ LVLFVGLGLL LSLLASFVMK CNALEDFTDT SDVRDFISKY KNRTGVSRKL LLSPDIGDGT KRIGEECSKD DLVVFQGSTV PLPNGVPAFT
101: VEIINACASD CSVTEIHVSC GWFSSVRLVN PRVFRRLSYD DCLVNDGQPL SPGQTLSFQY ANSFSYPLSV SSVSCF
101: VEIINACASD CSVTEIHVSC GWFSSVRLVN PRVFRRLSYD DCLVNDGQPL SPGQTLSFQY ANSFSYPLSV SSVSCF
001: MRMEHIYKFQ HWLFFIGLGV LLSLSLSVKA NDFEGSNDRR SIALKARSFV SINENRTALS RKLLLSPDIG DGTNRIGQDC SKDDIVLFQG STNPLPSGVP
101: SYTVEIFNSC VSDCNIAEIH VSCGWFSSVR LVNPRVFRRL DYDDCLVNDG QPLGPGQSLS FQYANSFSYP LSVASVSCF
101: SYTVEIFNSC VSDCNIAEIH VSCGWFSSVR LVNPRVFRRL DYDDCLVNDG QPLGPGQSLS FQYANSFSYP LSVASVSCF
Arabidopsis Description
TDL1TPD1 protein homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q1G3T1]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.