Factsheet for Bra010173.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26905	Canola	extracellular	100.0	100.0
CDX73256	Canola	extracellular	93.75	93.75
AT1G32583.1	Thale cress	extracellular	67.05	65.92
GSMUA_AchrUn_...	Banana	cytosol	38.07	62.04
GSMUA_Achr8P26310_001	Banana	cytosol	41.48	58.87
VIT_00s0194g00170.t01	Wine grape	extracellular	43.75	44.25
Bra013852.1-P	Field mustard	golgi, plasma membrane	40.34	41.52
HORVU7Hr1G058610.2	Barley	cytosol	18.18	38.1
HORVU1Hr1G026400.6	Barley	mitochondrion	32.95	36.71
TraesCS2B01G096400.1	Wheat	extracellular	35.8	33.87
TraesCS2D01G080200.1	Wheat	extracellular	35.23	33.33
TraesCS2A01G082300.1	Wheat	extracellular	35.23	33.33
Os12t0472500-01	Rice	plasma membrane	40.34	31.42
OQU79047	Sorghum	plastid	38.07	30.88
TraesCS1D01G119800.1	Wheat	plastid	36.93	29.55
TraesCS1B01G138400.1	Wheat	endoplasmic reticulum, plastid	36.93	29.28
TraesCS1A01G118900.1	Wheat	endoplasmic reticulum, plastid	36.36	29.09
Zm00001d023681_P001	Maize	extracellular	35.23	28.97

Protein Annotations

EnsemblPlants:Bra010173.1	EnsemblPlants:Bra010173.1-P	EnsemblPlantsGene:Bra010173	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408
GO:GO:0009628	PANTHER:PTHR33184	PANTHER:PTHR33184:SF26	SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix
UniParc:UPI000253F7DF	UniProt:M4D124	MapMan:11.10.1.7.1	:	:	:

Description

AT1G32583 (E=6e-063) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TPD1 (TAPETUM DETERMINANT 1) (TAIR:AT4G24972.1); Has 78 Blast hits to 76 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA06:+:20494576..20495504

Molecular Weight (calculated)

19433.2 Da

IEP (calculated)

4.873

GRAVY (calculated)

0.132

Length

176 amino acids

Sequence
(BLAST)

001: MKHFYQFQQH LVLFIGLGLL LSLLASFVMK CNALEDFTDT SDVRDFISNY ENRNGLSRKL LLSPDIGDGT KRIGEECSKD DVVVFQGSTV PLPNGVPAFT
101: VEILNACASD CSVAEIHVSC GWFSSVRLVN PRVFRRLSYD DCLVNDGQPL APGQTLSFQY ANSFAYPLSV SSVSCF

Best Arabidopsis Sequence Match ( AT1G32583.1 )
(BLAST)

001: MRMEHIYKFQ HWLFFIGLGV LLSLSLSVKA NDFEGSNDRR SIALKARSFV SINENRTALS RKLLLSPDIG DGTNRIGQDC SKDDIVLFQG STNPLPSGVP
101: SYTVEIFNSC VSDCNIAEIH VSCGWFSSVR LVNPRVFRRL DYDDCLVNDG QPLGPGQSLS FQYANSFSYP LSVASVSCF

Arabidopsis Description

TDL1TPD1 protein homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q1G3T1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.