Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G093530.7 | |
| HORVU6Hr1G033670.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24972.1 | HORVU3Hr1G093530.7 | AT5G07280.1 | 18250314 |
| AT4G24972.1 | HORVU6Hr1G033670.5 | AT5G07280.1 | 18250314 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G058610.2 | Barley | cytosol | 37.97 | 71.43 |
| CDY01265 | Canola | extracellular | 23.42 | 58.73 |
| GSMUA_Achr6P06090_001 | Banana | plastid | 23.42 | 55.22 |
| GSMUA_AchrUn_... | Banana | cytosol | 36.71 | 53.7 |
| TraesCS1A01G118900.1 | Wheat | endoplasmic reticulum, plastid | 74.05 | 53.18 |
| TraesCS1B01G138400.1 | Wheat | endoplasmic reticulum, plastid | 74.05 | 52.7 |
| TraesCS1D01G119800.1 | Wheat | plastid | 72.15 | 51.82 |
| GSMUA_Achr9P01220_001 | Banana | cytosol | 34.81 | 50.93 |
| KRH41105 | Soybean | cytosol | 32.91 | 44.07 |
| PGSC0003DMT400081204 | Potato | cytosol | 37.34 | 43.7 |
| Os12t0472500-01 | Rice | plasma membrane | 62.03 | 43.36 |
| OQU79047 | Sorghum | plastid | 59.49 | 43.32 |
| Zm00001d023681_P001 | Maize | extracellular | 58.23 | 42.99 |
| GSMUA_Achr8P26310_001 | Banana | cytosol | 33.54 | 42.74 |
| CDX84078 | Canola | cytosol, extracellular, mitochondrion, plastid | 22.78 | 39.13 |
| Solyc11g006850.1.1 | Tomato | extracellular | 31.65 | 37.04 |
| PGSC0003DMT400092903 | Potato | cytosol | 31.65 | 37.04 |
| Solyc03g097530.2.1 | Tomato | extracellular, plasma membrane | 38.61 | 34.66 |
| AT1G32583.1 | Thale cress | extracellular | 39.24 | 34.64 |
| VIT_00s0194g00170.t01 | Wine grape | extracellular | 37.97 | 34.48 |
| CDY26905 | Canola | extracellular | 36.71 | 32.95 |
| Bra010173.1-P | Field mustard | extracellular | 36.71 | 32.95 |
| CDX73256 | Canola | extracellular | 36.08 | 32.39 |
| KRH54147 | Soybean | plasma membrane | 36.08 | 32.02 |
| Bra013852.1-P | Field mustard | golgi, plasma membrane | 33.54 | 30.99 |
| CDY34331 | Canola | plasma membrane | 33.54 | 30.81 |
| CDY01257 | Canola | cytosol, extracellular, plastid | 25.95 | 30.6 |
| AT4G24972.1 | Thale cress | plasma membrane | 31.65 | 28.41 |
| KRH63800 | Soybean | extracellular | 35.44 | 28.0 |
| Solyc11g012650.1.1 | Tomato | extracellular | 36.08 | 27.94 |
| PGSC0003DMT400034771 | Potato | cytosol | 34.18 | 27.0 |
| HORVU4Hr1G016500.2 | Barley | extracellular, vacuole | 27.85 | 25.58 |
| HORVU4Hr1G016460.1 | Barley | extracellular, golgi | 26.58 | 24.85 |
| HORVU0Hr1G036340.1 | Barley | extracellular, golgi | 26.58 | 24.85 |
| CDY03399 | Canola | extracellular, golgi | 35.44 | 19.93 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G026400.6 | EnsemblPlantsGene:HORVU1Hr1G026400 | PANTHER:PTHR33184 | PANTHER:PTHR33184:SF26 | UniParc:UPI000B47F9D5 | UniProt:A0A287EZB6 |
| MapMan:11.10.1.7.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:132235006..132235632
Molecular Weight (calculated)
16828.8 Da
IEP (calculated)
6.226
GRAVY (calculated)
-0.065
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: LPPTNACARG PWFCARRSVN DTWAHFFFAG ADVGLGGVRP HRVDEGCAGK EDIAIYQGRG TTLPSGVPAY TVDVMNRCSG GDGDCAIAGI HVRCGWFSSV
101: SLVDPRKFRR LARDDCLLND GQPLLAGETI SFEYSNSFPY QLSVAVATCV DPAAATSP
101: SLVDPRKFRR LARDDCLLND GQPLLAGETI SFEYSNSFPY QLSVAVATCV DPAAATSP
001: MRMEHIYKFQ HWLFFIGLGV LLSLSLSVKA NDFEGSNDRR SIALKARSFV SINENRTALS RKLLLSPDIG DGTNRIGQDC SKDDIVLFQG STNPLPSGVP
101: SYTVEIFNSC VSDCNIAEIH VSCGWFSSVR LVNPRVFRRL DYDDCLVNDG QPLGPGQSLS FQYANSFSYP LSVASVSCF
101: SYTVEIFNSC VSDCNIAEIH VSCGWFSSVR LVNPRVFRRL DYDDCLVNDG QPLGPGQSLS FQYANSFSYP LSVASVSCF
Arabidopsis Description
TDL1TPD1 protein homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q1G3T1]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.