Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013852.1-P | Field mustard | golgi, plasma membrane | 78.98 | 81.29 |
| CDY34331 | Canola | plasma membrane | 77.84 | 79.65 |
| PGSC0003DMT400081204 | Potato | cytosol | 43.18 | 56.3 |
| GSMUA_Achr6P06090_001 | Banana | plastid | 19.32 | 50.75 |
| KRH41105 | Soybean | cytosol | 32.95 | 49.15 |
| GSMUA_Achr9P01220_001 | Banana | cytosol | 30.11 | 49.07 |
| Solyc03g097530.2.1 | Tomato | extracellular, plasma membrane | 44.89 | 44.89 |
| CDY03399 | Canola | extracellular, golgi | 66.48 | 41.64 |
| AT1G32583.1 | Thale cress | extracellular | 39.2 | 38.55 |
| HORVU7Hr1G058610.2 | Barley | cytosol | 15.91 | 33.33 |
| TraesCS2A01G082300.1 | Wheat | extracellular | 35.23 | 33.33 |
| TraesCS2B01G096400.1 | Wheat | extracellular | 34.66 | 32.8 |
| TraesCS2D01G080200.1 | Wheat | extracellular | 34.09 | 32.26 |
| HORVU1Hr1G026400.6 | Barley | mitochondrion | 28.41 | 31.65 |
| Zm00001d023681_P001 | Maize | extracellular | 35.23 | 28.97 |
| OQU79047 | Sorghum | plastid | 34.66 | 28.11 |
| Os12t0472500-01 | Rice | plasma membrane | 35.8 | 27.88 |
| TraesCS1D01G119800.1 | Wheat | plastid | 34.66 | 27.73 |
| TraesCS1A01G118900.1 | Wheat | endoplasmic reticulum, plastid | 34.66 | 27.73 |
| TraesCS1B01G138400.1 | Wheat | endoplasmic reticulum, plastid | 34.66 | 27.48 |
Protein Annotations
| MapMan:11.10.1.7.1 | EntrezGene:2745725 | UniProt:A0A178V0R1 | ProteinID:AEE84984.1 | EMBL:AL049657 | ArrayExpress:AT4G24972 |
| EnsemblPlantsGene:AT4G24972 | RefSeq:AT4G24972 | TAIR:AT4G24972 | RefSeq:AT4G24972-TAIR-G | EnsemblPlants:AT4G24972.1 | TAIR:AT4G24972.1 |
| EMBL:AY394846 | GO:GO:0000003 | GO:GO:0001709 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0048653 | RefSeq:NP_974612.1 | ProteinID:OAO99333.1 | PO:PO:0000229 | PO:PO:0000293 | PO:PO:0007131 |
| PO:PO:0009025 | PO:PO:0009046 | PO:PO:0009066 | PO:PO:0020047 | PANTHER:PTHR33184 | PANTHER:PTHR33184:SF2 |
| UniProt:Q6TLJ2 | SignalP:SignalP-noTM | TMHMM:TMhelix | Symbol:TPD1 | UniParc:UPI000022655C | SEG:seg |
Description
TPD1TPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178V0R1]
Coordinates
chr4:+:12837353..12840230
Molecular Weight (calculated)
19457.7 Da
IEP (calculated)
9.037
GRAVY (calculated)
-0.061
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRRRLLVSA TLLSYLLYGM ALVSVEASGG EKLRDNLDLT KTTTSSPSIS HRKMLLLSPG TGKTERSVEP ERIGEKCKST DIVVNQAVTE PMPNGIPGYM
101: VEITNQCMSG CIISRIHINC GWFSSAKLIN PRVFKRIHYD DCLVNNGKPL PFGSTLSFHY ANTFPYHLSV AFVTCA
101: VEITNQCMSG CIISRIHINC GWFSSAKLIN PRVFKRIHYD DCLVNNGKPL PFGSTLSFHY ANTFPYHLSV AFVTCA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.