CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01957
EES06446

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24972.1	EES01957	AT5G07280.1	18250314
AT4G24972.1	EES06446	AT5G07280.1	18250314

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023681_P001	Maize	extracellular	61.29	62.15
HORVU1Hr1G026400.6	Barley	mitochondrion	43.32	59.49
CDY01265	Canola	extracellular	17.05	58.73
HORVU7Hr1G058610.2	Barley	cytosol	22.58	58.33
GSMUA_Achr6P06090_001	Banana	plastid	17.97	58.21
TraesCS1A01G118900.1	Wheat	endoplasmic reticulum, plastid	54.38	53.64
TraesCS1D01G119800.1	Wheat	plastid	53.46	52.73
TraesCS1B01G138400.1	Wheat	endoplasmic reticulum, plastid	53.92	52.7
GSMUA_Achr9P01220_001	Banana	cytosol	25.35	50.93
Os12t0472500-01	Rice	plasma membrane	53.0	50.88
GSMUA_AchrUn_...	Banana	cytosol	24.88	50.0
PGSC0003DMT400081204	Potato	cytosol	27.65	44.44
GSMUA_Achr8P26310_001	Banana	cytosol	23.96	41.94
PGSC0003DMT400092903	Potato	cytosol	24.42	39.26
CDX84078	Canola	cytosol, extracellular, mitochondrion, plastid	16.59	39.13
KRH41105	Soybean	cytosol	21.2	38.98
CDX73256	Canola	extracellular	31.34	38.64
Bra010173.1-P	Field mustard	extracellular	30.88	38.07
CDY26905	Canola	extracellular	30.88	38.07
AT1G32583.1	Thale cress	extracellular	31.34	37.99
Solyc11g006850.1.1	Tomato	extracellular	23.5	37.78
KRH54147	Soybean	plasma membrane	30.88	37.64
Bra013852.1-P	Field mustard	golgi, plasma membrane	28.11	35.67
VIT_00s0194g00170.t01	Wine grape	extracellular	28.57	35.63
CDY34331	Canola	plasma membrane	28.11	35.47
Solyc03g097530.2.1	Tomato	extracellular, plasma membrane	28.57	35.23
AT4G24972.1	Thale cress	plasma membrane	28.11	34.66
CDY01257	Canola	cytosol, extracellular, plastid	20.74	33.58
OQU86773	Sorghum	extracellular	26.27	32.02
KXG38580	Sorghum	extracellular	24.88	31.03
Solyc11g012650.1.1	Tomato	extracellular	28.57	30.39
PGSC0003DMT400034771	Potato	cytosol	27.19	29.5
KRH63800	Soybean	extracellular	27.19	29.5
KXG32362	Sorghum	extracellular	23.04	28.57
CDY03399	Canola	extracellular, golgi	29.95	23.13

Protein Annotations

EnsemblPlants:OQU79047	EnsemblPlantsGene:SORBI_3008G088878	GO:GO:0000003	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150
GO:GO:0009556	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010234
GO:GO:0030154	PANTHER:PTHR33184	PANTHER:PTHR33184:SF26	ProteinID:OQU79047	ProteinID:OQU79047.1	SEG:seg
SignalP:SignalP-noTM	UniParc:UPI000B423884	UniProt:A0A1Z5R5Q5	MapMan:11.10.1.7.1	:	:

Description

hypothetical protein

Coordinates

chr8:+:25542325..25544705

Molecular Weight (calculated)

22056.5 Da

IEP (calculated)

7.305

GRAVY (calculated)

0.095

Length

217 amino acids

Sequence
(BLAST)

001: MGPSAMRMRA SSSTGLKAIV ASTWLALLLG SGSLAASDDA GFSPPPTAVP AGPPRPALRA VATGLPVPVP VPAPLPRKIL RPSGVAGGSS GGAGGPVRPS
101: RMDEGCAGAE DIAIFQGHAS SLPGGVPAYK VDVINQCLGD LDGGDCAIAG IHVRCGWFSS VSLVDPRKFR RLGHDDCLLN DGRPLLGGET ISFEYANSFP
201: YELSVRVATC VDPTTTP

Best Arabidopsis Sequence Match ( AT1G32583.1 )
(BLAST)

001: MRMEHIYKFQ HWLFFIGLGV LLSLSLSVKA NDFEGSNDRR SIALKARSFV SINENRTALS RKLLLSPDIG DGTNRIGQDC SKDDIVLFQG STNPLPSGVP
101: SYTVEIFNSC VSDCNIAEIH VSCGWFSSVR LVNPRVFRRL DYDDCLVNDG QPLGPGQSLS FQYANSFSYP LSVASVSCF

Arabidopsis Description

TDL1TPD1 protein homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q1G3T1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.