Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012048_P001 | |
| Zm00001d015853_P001 | |
| Zm00001d042362_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24972.1 | Zm00001d012048_P001 | AT5G07280.1 | 18250314 |
| AT4G24972.1 | Zm00001d015853_P001 | AT5G07280.1 | 18250314 |
| AT4G24972.1 | Zm00001d042362_P001 | AT5G07280.1 | 18250314 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU79047 | Sorghum | plastid | 62.15 | 61.29 |
| HORVU1Hr1G026400.6 | Barley | mitochondrion | 42.99 | 58.23 |
| GSMUA_Achr6P06090_001 | Banana | plastid | 18.22 | 58.21 |
| CDY01265 | Canola | extracellular | 16.82 | 57.14 |
| HORVU7Hr1G058610.2 | Barley | cytosol | 21.5 | 54.76 |
| TraesCS1A01G118900.1 | Wheat | endoplasmic reticulum, plastid | 51.87 | 50.45 |
| TraesCS1D01G119800.1 | Wheat | plastid | 51.4 | 50.0 |
| GSMUA_Achr9P01220_001 | Banana | cytosol | 25.23 | 50.0 |
| TraesCS1B01G138400.1 | Wheat | endoplasmic reticulum, plastid | 51.4 | 49.55 |
| GSMUA_AchrUn_... | Banana | cytosol | 24.77 | 49.07 |
| Os12t0472500-01 | Rice | plasma membrane | 49.07 | 46.46 |
| PGSC0003DMT400081204 | Potato | cytosol | 28.04 | 44.44 |
| GSMUA_Achr8P26310_001 | Banana | cytosol | 24.3 | 41.94 |
| Zm00001d000032_P001 | Maize | cytosol | 21.96 | 39.83 |
| KRH54147 | Soybean | plasma membrane | 31.78 | 38.2 |
| KRH41105 | Soybean | cytosol | 21.03 | 38.14 |
| PGSC0003DMT400092903 | Potato | cytosol | 23.83 | 37.78 |
| Bra013852.1-P | Field mustard | golgi, plasma membrane | 29.44 | 36.84 |
| Solyc11g006850.1.1 | Tomato | extracellular | 22.9 | 36.3 |
| CDY34331 | Canola | plasma membrane | 28.97 | 36.05 |
| CDX84078 | Canola | cytosol, extracellular, mitochondrion, plastid | 15.42 | 35.87 |
| AT4G24972.1 | Thale cress | plasma membrane | 28.97 | 35.23 |
| CDY26905 | Canola | extracellular | 28.97 | 35.23 |
| Bra010173.1-P | Field mustard | extracellular | 28.97 | 35.23 |
| Solyc03g097530.2.1 | Tomato | extracellular, plasma membrane | 28.5 | 34.66 |
| VIT_00s0194g00170.t01 | Wine grape | extracellular | 28.04 | 34.48 |
| CDX73256 | Canola | extracellular | 28.04 | 34.09 |
| AT1G32583.1 | Thale cress | extracellular | 28.5 | 34.08 |
| CDY01257 | Canola | cytosol, extracellular, plastid | 21.03 | 33.58 |
| Zm00001d040600_P001 | Maize | extracellular, plastid | 27.1 | 33.33 |
| Zm00001d033019_P001 | Maize | extracellular | 27.1 | 32.58 |
| Zm00001d014205_P001 | Maize | extracellular | 23.83 | 30.18 |
| KRH63800 | Soybean | extracellular | 27.57 | 29.5 |
| Solyc11g012650.1.1 | Tomato | extracellular | 28.04 | 29.41 |
| PGSC0003DMT400034771 | Potato | cytosol | 27.1 | 29.0 |
| CDY03399 | Canola | extracellular, golgi | 29.91 | 22.78 |
Protein Annotations
| EnsemblPlants:Zm00001d023681_P001 | EnsemblPlants:Zm00001d023681_T001 | EnsemblPlantsGene:Zm00001d023681 | GO:GO:0000003 | GO:GO:0007049 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009556 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 |
| GO:GO:0010234 | GO:GO:0030154 | PANTHER:PTHR33184 | PANTHER:PTHR33184:SF26 | PFscan:PS51257 | ProteinID:AQK39770.1 |
| SEG:seg | SignalP:SignalP-noTM | UniParc:UPI000221140A | UniProt:K7TXT8 | MapMan:11.10.1.7.1 | : |
Description
multiple archesporial cells1 multiple archesporial cells1
Coordinates
chr10:-:15208539..15211365
Molecular Weight (calculated)
21977.4 Da
IEP (calculated)
7.735
GRAVY (calculated)
0.111
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMRAPSSTG LKAIVASAWL AVLLGSASLA ACDQDAGFSP PPTAVPAVPP RPALRAAAAA VPVPVPAPLP RKILRSPGVV AGGSGEGAAA AGPVRPSRMD
101: EGCAGAEDIA IYQRHASSLP NGVPAYKVDV MNQCLGDPGG GDCAIAGIHV RCGWFSSVNL VDPLKFRRLR HDDCLLNDGR PLLGGDTISF EYANSFPYEL
201: SVRVATCVDP TTAP
101: EGCAGAEDIA IYQRHASSLP NGVPAYKVDV MNQCLGDPGG GDCAIAGIHV RCGWFSSVNL VDPLKFRRLR HDDCLLNDGR PLLGGDTISF EYANSFPYEL
201: SVRVATCVDP TTAP
001: MNRRRLLVSA TLLSYLLYGM ALVSVEASGG EKLRDNLDLT KTTTSSPSIS HRKMLLLSPG TGKTERSVEP ERIGEKCKST DIVVNQAVTE PMPNGIPGYM
101: VEITNQCMSG CIISRIHINC GWFSSAKLIN PRVFKRIHYD DCLVNNGKPL PFGSTLSFHY ANTFPYHLSV AFVTCA
101: VEITNQCMSG CIISRIHINC GWFSSAKLIN PRVFKRIHYD DCLVNNGKPL PFGSTLSFHY ANTFPYHLSV AFVTCA
Arabidopsis Description
TPD1TPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178V0R1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.