Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 5
- golgi 3
- peroxisome 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0917500-01 | |
| Os02t0194400-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24972.1 | Os01t0917500-01 | AT5G07280.1 | 18250314 |
| AT4G24972.1 | Os02t0194400-02 | AT5G07280.1 | 18250314 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G026400.6 | Barley | mitochondrion | 43.36 | 62.03 |
| CDY01265 | Canola | extracellular | 16.81 | 60.32 |
| TraesCS1D01G119800.1 | Wheat | plastid | 56.64 | 58.18 |
| TraesCS1A01G118900.1 | Wheat | endoplasmic reticulum, plastid | 56.64 | 58.18 |
| TraesCS1B01G138400.1 | Wheat | endoplasmic reticulum, plastid | 57.08 | 58.11 |
| GSMUA_Achr6P06090_001 | Banana | plastid | 16.81 | 56.72 |
| HORVU7Hr1G058610.2 | Barley | cytosol | 20.8 | 55.95 |
| GSMUA_AchrUn_... | Banana | cytosol | 25.66 | 53.7 |
| GSMUA_Achr9P01220_001 | Banana | cytosol | 25.66 | 53.7 |
| OQU79047 | Sorghum | plastid | 50.88 | 53.0 |
| Zm00001d023681_P001 | Maize | extracellular | 46.46 | 49.07 |
| PGSC0003DMT400081204 | Potato | cytosol | 29.2 | 48.89 |
| GSMUA_Achr8P26310_001 | Banana | cytosol | 23.89 | 43.55 |
| KRH41105 | Soybean | cytosol | 21.68 | 41.53 |
| CDY26905 | Canola | extracellular | 31.42 | 40.34 |
| Bra010173.1-P | Field mustard | extracellular | 31.42 | 40.34 |
| AT1G32583.1 | Thale cress | extracellular | 31.86 | 40.22 |
| CDX84078 | Canola | cytosol, extracellular, mitochondrion, plastid | 16.37 | 40.22 |
| CDX73256 | Canola | extracellular | 30.97 | 39.77 |
| PGSC0003DMT400092903 | Potato | cytosol | 23.45 | 39.26 |
| Solyc03g097530.2.1 | Tomato | extracellular, plasma membrane | 30.09 | 38.64 |
| KRH54147 | Soybean | plasma membrane | 30.09 | 38.2 |
| Solyc11g006850.1.1 | Tomato | extracellular | 22.12 | 37.04 |
| Bra013852.1-P | Field mustard | golgi, plasma membrane | 27.88 | 36.84 |
| VIT_00s0194g00170.t01 | Wine grape | extracellular | 28.32 | 36.78 |
| CDY34331 | Canola | plasma membrane | 27.88 | 36.63 |
| AT4G24972.1 | Thale cress | plasma membrane | 27.88 | 35.8 |
| CDY01257 | Canola | cytosol, extracellular, plastid | 20.35 | 34.33 |
| Solyc11g012650.1.1 | Tomato | extracellular | 29.2 | 32.35 |
| KRH63800 | Soybean | extracellular | 27.43 | 31.0 |
| Os10t0207500-01 | Rice | extracellular | 22.57 | 30.18 |
| PGSC0003DMT400034771 | Potato | cytosol | 26.11 | 29.5 |
| CDY03399 | Canola | extracellular, golgi | 30.09 | 24.2 |
Protein Annotations
| MapMan:11.10.1.7.1 | EntrezGene:4352199 | ProteinID:ABA98465.1 | EMBL:AK108523 | EMBL:AL713941 | ProteinID:BAF29772.1 |
| ProteinID:BAT17103.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007049 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009556 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0010234 | GO:GO:0030154 | EnsemblPlantsGene:Os12g0472500 | EnsemblPlants:Os12t0472500-01 | PANTHER:PTHR33184 |
| PANTHER:PTHR33184:SF26 | UniProt:Q2QR54 | SignalP:SignalP-noTM | UniParc:UPI0000681174 | RefSeq:XP_015619000.1 | SEG:seg |
Description
TPD1-like 1A, MICROSPORELESS2Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein, Regulation of early anther cell differentiation (Os12t0472500-01)
Coordinates
chr12:+:16988415..16990867
Molecular Weight (calculated)
22735.0 Da
IEP (calculated)
4.900
GRAVY (calculated)
0.187
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVSSASSTP PPPAFAAAAW AVVLLAMLRS DVALAAAASS NDDTGLSPLM PPPPLAAPVP AAVSPAPATP PAVLSPRKLL RPQGADVVGV GFVSGSGGGG
101: GGDGVRTRRV DDGCAGADDI AIYQGRATPL PSGVPAYTVD VMNRCAGGGG GDEECAIAGI HVRCGWFSSV SLVDPRVFRR LGHDDCLLND GRPLLAGETV
201: SFEYTNSFPY KLSVSVATCV VDPAAP
101: GGDGVRTRRV DDGCAGADDI AIYQGRATPL PSGVPAYTVD VMNRCAGGGG GDEECAIAGI HVRCGWFSSV SLVDPRVFRR LGHDDCLLND GRPLLAGETV
201: SFEYTNSFPY KLSVSVATCV VDPAAP
001: MRMEHIYKFQ HWLFFIGLGV LLSLSLSVKA NDFEGSNDRR SIALKARSFV SINENRTALS RKLLLSPDIG DGTNRIGQDC SKDDIVLFQG STNPLPSGVP
101: SYTVEIFNSC VSDCNIAEIH VSCGWFSSVR LVNPRVFRRL DYDDCLVNDG QPLGPGQSLS FQYANSFSYP LSVASVSCF
101: SYTVEIFNSC VSDCNIAEIH VSCGWFSSVR LVNPRVFRRL DYDDCLVNDG QPLGPGQSLS FQYANSFSYP LSVASVSCF
Arabidopsis Description
TDL1TPD1 protein homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q1G3T1]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.