Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr5P25270_001 | |
| GSMUA_Achr8P00900_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24972.1 | GSMUA_Achr5P25270_001 | AT5G07280.1 | 18250314 |
| AT4G24972.1 | GSMUA_Achr8P00900_001 | AT5G07280.1 | 18250314 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P01220_001 | Banana | cytosol | 74.63 | 46.3 |
| GSMUA_AchrUn_... | Banana | cytosol | 65.67 | 40.74 |
| HORVU7Hr1G058610.2 | Barley | cytosol | 44.78 | 35.71 |
| GSMUA_Achr8P26310_001 | Banana | cytosol | 59.7 | 32.26 |
| Solyc11g006850.1.1 | Tomato | extracellular | 58.21 | 28.89 |
| KRH41105 | Soybean | cytosol | 50.75 | 28.81 |
| PGSC0003DMT400092903 | Potato | cytosol | 56.72 | 28.15 |
| KRH54147 | Soybean | plasma membrane | 62.69 | 23.6 |
| HORVU1Hr1G026400.6 | Barley | mitochondrion | 55.22 | 23.42 |
| Bra013852.1-P | Field mustard | golgi, plasma membrane | 53.73 | 21.05 |
| CDY34331 | Canola | plasma membrane | 53.73 | 20.93 |
| PGSC0003DMT400034771 | Potato | cytosol | 58.21 | 19.5 |
| AT4G24972.1 | Thale cress | plasma membrane | 50.75 | 19.32 |
| Solyc11g012650.1.1 | Tomato | extracellular | 58.21 | 19.12 |
| Zm00001d023681_P001 | Maize | extracellular | 58.21 | 18.22 |
| KRH63800 | Soybean | extracellular | 53.73 | 18.0 |
| OQU79047 | Sorghum | plastid | 58.21 | 17.97 |
| TraesCS2A01G082300.1 | Wheat | extracellular | 49.25 | 17.74 |
| TraesCS2B01G096400.1 | Wheat | extracellular | 47.76 | 17.2 |
| TraesCS2D01G080200.1 | Wheat | extracellular | 47.76 | 17.2 |
| TraesCS1A01G118900.1 | Wheat | endoplasmic reticulum, plastid | 55.22 | 16.82 |
| TraesCS1D01G119800.1 | Wheat | plastid | 55.22 | 16.82 |
| Os12t0472500-01 | Rice | plasma membrane | 56.72 | 16.81 |
| TraesCS1B01G138400.1 | Wheat | endoplasmic reticulum, plastid | 55.22 | 16.67 |
| CDY03399 | Canola | extracellular, golgi | 52.24 | 12.46 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P06090_001 | EnsemblPlants:GSMUA_Achr6T06090_001 | EnsemblPlantsGene:GSMUA_Achr6G06090_001 | PANTHER:PTHR33184 | PANTHER:PTHR33184:SF2 | UniParc:UPI0002956679 |
| UniProt:M0T4K7 | MapMan:11.10.1.7.1 | : | : | : | : |
Description
Putative Uncharacterized protein At1g05835 [Source:GMGC_GENE;Acc:GSMUA_Achr6G06090_001]
Coordinates
chr6:-:4105948..4106151
Molecular Weight (calculated)
7344.8 Da
IEP (calculated)
10.153
GRAVY (calculated)
0.033
Length
67 amino acids
Sequence
(BLAST)
(BLAST)
1: MAHIHLTCGA FSSARLVNPR IFRRLRVNDC LLNDGRPLPS GSSISFQYAN SFSYPLAVSN ASCIRSS
001: MRMEHIYKFQ HWLFFIGLGV LLSLSLSVKA NDFEGSNDRR SIALKARSFV SINENRTALS RKLLLSPDIG DGTNRIGQDC SKDDIVLFQG STNPLPSGVP
101: SYTVEIFNSC VSDCNIAEIH VSCGWFSSVR LVNPRVFRRL DYDDCLVNDG QPLGPGQSLS FQYANSFSYP LSVASVSCF
101: SYTVEIFNSC VSDCNIAEIH VSCGWFSSVR LVNPRVFRRL DYDDCLVNDG QPLGPGQSLS FQYANSFSYP LSVASVSCF
Arabidopsis Description
TDL1TPD1 protein homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q1G3T1]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.