Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G138400.1 | Wheat | endoplasmic reticulum, plastid | 99.09 | 98.2 |
| TraesCS1D01G119800.1 | Wheat | plastid | 97.73 | 97.73 |
| HORVU1Hr1G026400.6 | Barley | mitochondrion | 53.18 | 74.05 |
| HORVU7Hr1G058610.2 | Barley | cytosol | 27.27 | 71.43 |
| CDY01265 | Canola | extracellular | 16.82 | 58.73 |
| Os12t0472500-01 | Rice | plasma membrane | 58.18 | 56.64 |
| TraesCS2A01G082300.1 | Wheat | extracellular | 46.82 | 55.38 |
| GSMUA_Achr6P06090_001 | Banana | plastid | 16.82 | 55.22 |
| OQU79047 | Sorghum | plastid | 53.64 | 54.38 |
| GSMUA_AchrUn_... | Banana | cytosol | 25.91 | 52.78 |
| Zm00001d023681_P001 | Maize | extracellular | 50.45 | 51.87 |
| GSMUA_Achr9P01220_001 | Banana | cytosol | 25.0 | 50.93 |
| PGSC0003DMT400081204 | Potato | cytosol | 28.18 | 45.93 |
| GSMUA_Achr8P26310_001 | Banana | cytosol | 23.64 | 41.94 |
| KRH41105 | Soybean | cytosol | 21.82 | 40.68 |
| CDX84078 | Canola | cytosol, extracellular, mitochondrion, plastid | 16.82 | 40.22 |
| Solyc11g006850.1.1 | Tomato | extracellular | 24.09 | 39.26 |
| PGSC0003DMT400092903 | Potato | cytosol | 24.09 | 39.26 |
| AT1G32583.1 | Thale cress | extracellular | 31.82 | 39.11 |
| KRH54147 | Soybean | plasma membrane | 30.91 | 38.2 |
| CDX73256 | Canola | extracellular | 29.55 | 36.93 |
| Bra013852.1-P | Field mustard | golgi, plasma membrane | 28.64 | 36.84 |
| CDY34331 | Canola | plasma membrane | 28.64 | 36.63 |
| CDY26905 | Canola | extracellular | 29.09 | 36.36 |
| Bra010173.1-P | Field mustard | extracellular | 29.09 | 36.36 |
| Solyc03g097530.2.1 | Tomato | extracellular, plasma membrane | 29.09 | 36.36 |
| VIT_00s0194g00170.t01 | Wine grape | extracellular | 27.73 | 35.06 |
| AT4G24972.1 | Thale cress | plasma membrane | 27.73 | 34.66 |
| CDY01257 | Canola | cytosol, extracellular, plastid | 19.55 | 32.09 |
| KRH63800 | Soybean | extracellular | 29.09 | 32.0 |
| Solyc11g012650.1.1 | Tomato | extracellular | 29.09 | 31.37 |
| TraesCS4A01G203700.1 | Wheat | extracellular | 24.09 | 31.36 |
| TraesCS4A01G203500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 22.73 | 28.74 |
| PGSC0003DMT400034771 | Potato | cytosol | 25.91 | 28.5 |
| CDY03399 | Canola | extracellular, golgi | 30.45 | 23.84 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G118900.1 | EnsemblPlantsGene:TraesCS1A01G118900 | GO:GO:0000003 | GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009556 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010234 |
| GO:GO:0030154 | PANTHER:PTHR33184 | PANTHER:PTHR33184:SF26 | SEG:seg | SignalP:SignalP-noTM | MapMan:11.10.1.7.1 |
Description
No Description!
Coordinates
chr1A:+:127831992..127833434
Molecular Weight (calculated)
22410.5 Da
IEP (calculated)
7.176
GRAVY (calculated)
0.133
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MRASSSSATP AARATAAWAV VLLAALCSVS LASASVDSVS LAPASVSLAP ASVDAGFSPT PAAPAPTPGS SAAPPRPPYR AVLPRKVLRP AGTDVDLGAV
101: RPHRVDEGCA GKEDIAIYQG RGTTLPSGVP AYTVDVMNRC SGGDGDCAIA GIHVRCGWFS SVSLVDPRKF RRLARDDCLL NDGQPLLAGE TISFEYSNSF
201: PYQLSVAVAT CVDPAAATSP
101: RPHRVDEGCA GKEDIAIYQG RGTTLPSGVP AYTVDVMNRC SGGDGDCAIA GIHVRCGWFS SVSLVDPRKF RRLARDDCLL NDGQPLLAGE TISFEYSNSF
201: PYQLSVAVAT CVDPAAATSP
001: MRMEHIYKFQ HWLFFIGLGV LLSLSLSVKA NDFEGSNDRR SIALKARSFV SINENRTALS RKLLLSPDIG DGTNRIGQDC SKDDIVLFQG STNPLPSGVP
101: SYTVEIFNSC VSDCNIAEIH VSCGWFSSVR LVNPRVFRRL DYDDCLVNDG QPLGPGQSLS FQYANSFSYP LSVASVSCF
101: SYTVEIFNSC VSDCNIAEIH VSCGWFSSVR LVNPRVFRRL DYDDCLVNDG QPLGPGQSLS FQYANSFSYP LSVASVSCF
Arabidopsis Description
TDL1TPD1 protein homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q1G3T1]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.