Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 6
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra009277.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24972.1 | Bra009277.1-P | AT5G07280.1 | 18250314 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34331 | Canola | plasma membrane | 98.25 | 97.67 |
| AT4G24972.1 | Thale cress | plasma membrane | 81.29 | 78.98 |
| PGSC0003DMT400081204 | Potato | cytosol | 45.61 | 57.78 |
| GSMUA_Achr6P06090_001 | Banana | plastid | 21.05 | 53.73 |
| KRH41105 | Soybean | cytosol | 35.09 | 50.85 |
| GSMUA_Achr9P01220_001 | Banana | cytosol | 31.58 | 50.0 |
| CDY03399 | Canola | extracellular, golgi | 81.29 | 49.47 |
| Solyc03g097530.2.1 | Tomato | extracellular, plasma membrane | 47.95 | 46.59 |
| Bra010173.1-P | Field mustard | extracellular | 41.52 | 40.34 |
| TraesCS2B01G096400.1 | Wheat | extracellular | 39.18 | 36.02 |
| TraesCS2D01G080200.1 | Wheat | extracellular | 36.84 | 33.87 |
| TraesCS2A01G082300.1 | Wheat | extracellular | 36.84 | 33.87 |
| HORVU1Hr1G026400.6 | Barley | mitochondrion | 30.99 | 33.54 |
| HORVU7Hr1G058610.2 | Barley | cytosol | 16.37 | 33.33 |
| Zm00001d023681_P001 | Maize | extracellular | 36.84 | 29.44 |
| TraesCS1D01G119800.1 | Wheat | plastid | 36.84 | 28.64 |
| TraesCS1A01G118900.1 | Wheat | endoplasmic reticulum, plastid | 36.84 | 28.64 |
| TraesCS1B01G138400.1 | Wheat | endoplasmic reticulum, plastid | 36.84 | 28.38 |
| OQU79047 | Sorghum | plastid | 35.67 | 28.11 |
| Os12t0472500-01 | Rice | plasma membrane | 36.84 | 27.88 |
Protein Annotations
| EnsemblPlants:Bra013852.1 | EnsemblPlants:Bra013852.1-P | EnsemblPlantsGene:Bra013852 | GO:GO:0000003 | GO:GO:0001709 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0048653 |
| PANTHER:PTHR33184 | PANTHER:PTHR33184:SF2 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0002546665 |
| UniProt:M4DBJ2 | MapMan:11.10.1.7.1 | : | : | : | : |
Description
AT4G24972 (E=1e-068) TPD1 | TPD1 (TAPETUM DETERMINANT 1)
Coordinates
chrA01:+:8068157..8069393
Molecular Weight (calculated)
19008.0 Da
IEP (calculated)
9.282
GRAVY (calculated)
-0.095
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRRLLLSA TILSYLLHGM ALVSVVASGV EEVRDNVDLT KTTTLATTST HRKMLRLSHE TRVEPDRIGE KCKKSDIVVN QAATEPMPNG IPGYTVEITN
101: QCMSGCNISR IHVSCGWFSS AKLVNPRVFK RIHYDDCLVN NGKPLPYGST LSFHYANTFP YRLAVAFVTC S
101: QCMSGCNISR IHVSCGWFSS AKLVNPRVFK RIHYDDCLVN NGKPLPYGST LSFHYANTFP YRLAVAFVTC S
001: MNRRRLLVSA TLLSYLLYGM ALVSVEASGG EKLRDNLDLT KTTTSSPSIS HRKMLLLSPG TGKTERSVEP ERIGEKCKST DIVVNQAVTE PMPNGIPGYM
101: VEITNQCMSG CIISRIHINC GWFSSAKLIN PRVFKRIHYD DCLVNNGKPL PFGSTLSFHY ANTFPYHLSV AFVTCA
101: VEITNQCMSG CIISRIHINC GWFSSAKLIN PRVFKRIHYD DCLVNNGKPL PFGSTLSFHY ANTFPYHLSV AFVTCA
Arabidopsis Description
TPD1TPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178V0R1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.