Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G082300.1 | Wheat | extracellular | 93.55 | 93.55 |
| TraesCS2B01G096400.1 | Wheat | extracellular | 79.57 | 79.57 |
| CDY01265 | Canola | extracellular | 18.28 | 53.97 |
| GSMUA_AchrUn_... | Banana | cytosol | 29.57 | 50.93 |
| GSMUA_Achr9P01220_001 | Banana | cytosol | 29.03 | 50.0 |
| GSMUA_Achr6P06090_001 | Banana | plastid | 17.2 | 47.76 |
| TraesCS1D01G119800.1 | Wheat | plastid | 55.38 | 46.82 |
| PGSC0003DMT400081204 | Potato | cytosol | 33.33 | 45.93 |
| KRH41105 | Soybean | cytosol | 26.88 | 42.37 |
| GSMUA_Achr8P26310_001 | Banana | cytosol | 27.96 | 41.94 |
| Solyc11g006850.1.1 | Tomato | extracellular | 29.57 | 40.74 |
| PGSC0003DMT400092903 | Potato | cytosol | 29.57 | 40.74 |
| CDX84078 | Canola | cytosol, extracellular, mitochondrion, plastid | 19.35 | 39.13 |
| VIT_00s0194g00170.t01 | Wine grape | extracellular | 36.02 | 38.51 |
| Solyc03g097530.2.1 | Tomato | extracellular, plasma membrane | 35.48 | 37.5 |
| AT1G32583.1 | Thale cress | extracellular | 36.02 | 37.43 |
| KRH54147 | Soybean | plasma membrane | 35.48 | 37.08 |
| Bra013852.1-P | Field mustard | golgi, plasma membrane | 33.87 | 36.84 |
| CDY34331 | Canola | plasma membrane | 33.87 | 36.63 |
| CDX73256 | Canola | extracellular | 34.41 | 36.36 |
| CDY26905 | Canola | extracellular | 33.33 | 35.23 |
| Bra010173.1-P | Field mustard | extracellular | 33.33 | 35.23 |
| AT4G24972.1 | Thale cress | plasma membrane | 32.26 | 34.09 |
| KRH63800 | Soybean | extracellular | 33.87 | 31.5 |
| CDY01257 | Canola | cytosol, extracellular, plastid | 22.04 | 30.6 |
| TraesCS4D01G104300.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 26.88 | 28.74 |
| TraesCS4D01G104500.2 | Wheat | vacuole | 24.73 | 27.88 |
| PGSC0003DMT400034771 | Potato | cytosol | 29.57 | 27.5 |
| Solyc11g012650.1.1 | Tomato | extracellular | 29.03 | 26.47 |
| CDY03399 | Canola | extracellular, golgi | 37.1 | 24.56 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G080200.1 | EnsemblPlantsGene:TraesCS2D01G080200 | PANTHER:PTHR33184 | PANTHER:PTHR33184:SF26 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | MapMan:11.10.1.7.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:34261911..34263540
Molecular Weight (calculated)
18997.8 Da
IEP (calculated)
6.474
GRAVY (calculated)
0.367
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MMASFSPLCA LVMLLAAVGS VSLASASVAD AGSLSLNSSL LASAAPPPSA VLPRKVLRPA AVGADVPHRV SLGCAGADDI AIEQGPGTTL PSGIPSYTVD
101: IINRCSGAGR AACAISGIRV RCGWFSSVTL VDPSKFRRVA PDDCLVNDGK PLLADDTISF EYANSFQYKL YVAKATCVHP AADTSD
101: IINRCSGAGR AACAISGIRV RCGWFSSVTL VDPSKFRRVA PDDCLVNDGK PLLADDTISF EYANSFQYKL YVAKATCVHP AADTSD
001: MSKPLKFLLW SSLALLLLQI GSGAICEGKS SEPAVRQTQV KWREGKKFRV EVMNKCPMCP IINLRLKCQG FPQSLVDPTF LRVLSSSAGN CVVNDGLPLS
101: PMQTLSFNYS NTHQFALRPL SWSFQCE
101: PMQTLSFNYS NTHQFALRPL SWSFQCE
Arabidopsis Description
Uncharacterized protein At1g05835 [Source:UniProtKB/Swiss-Prot;Acc:A8MS78]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.