Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24972.1 | CDX70023 | AT5G07280.1 | 18250314 |
| AT4G24972.1 | CDX98990 | AT5G07280.1 | 18250314 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013852.1-P | Field mustard | golgi, plasma membrane | 97.67 | 98.25 |
| AT4G24972.1 | Thale cress | plasma membrane | 79.65 | 77.84 |
| CDY01265 | Canola | extracellular | 22.09 | 60.32 |
| PGSC0003DMT400081204 | Potato | cytosol | 45.35 | 57.78 |
| GSMUA_Achr6P06090_001 | Banana | plastid | 20.93 | 53.73 |
| KRH41105 | Soybean | cytosol | 34.88 | 50.85 |
| GSMUA_Achr9P01220_001 | Banana | cytosol | 31.4 | 50.0 |
| CDY03399 | Canola | extracellular, golgi | 80.81 | 49.47 |
| CDX84078 | Canola | cytosol, extracellular, mitochondrion, plastid | 25.58 | 47.83 |
| Solyc03g097530.2.1 | Tomato | extracellular, plasma membrane | 47.67 | 46.59 |
| CDX73256 | Canola | extracellular | 41.86 | 40.91 |
| CDY26905 | Canola | extracellular | 41.28 | 40.34 |
| CDY01257 | Canola | cytosol, extracellular, plastid | 28.49 | 36.57 |
| TraesCS2B01G096400.1 | Wheat | extracellular | 38.37 | 35.48 |
| TraesCS2A01G082300.1 | Wheat | extracellular | 36.63 | 33.87 |
| TraesCS2D01G080200.1 | Wheat | extracellular | 36.63 | 33.87 |
| HORVU1Hr1G026400.6 | Barley | mitochondrion | 30.81 | 33.54 |
| HORVU7Hr1G058610.2 | Barley | cytosol | 16.28 | 33.33 |
| Zm00001d023681_P001 | Maize | extracellular | 36.05 | 28.97 |
| TraesCS1A01G118900.1 | Wheat | endoplasmic reticulum, plastid | 36.63 | 28.64 |
| TraesCS1D01G119800.1 | Wheat | plastid | 36.63 | 28.64 |
| TraesCS1B01G138400.1 | Wheat | endoplasmic reticulum, plastid | 36.63 | 28.38 |
| OQU79047 | Sorghum | plastid | 35.47 | 28.11 |
| Os12t0472500-01 | Rice | plasma membrane | 36.63 | 27.88 |
Protein Annotations
| EnsemblPlants:CDY34331 | EnsemblPlantsGene:GSBRNA2T00056370001 | PANTHER:PTHR33184 | PANTHER:PTHR33184:SF2 | ProteinID:CDY34331 | ProteinID:CDY34331.1 |
| SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE6CB1 | UniProt:A0A078H986 | MapMan:11.10.1.7.1 |
Description
BnaA01g14340DBnaA01g14340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H986]
Coordinates
chrLK032332:+:328733..330569
Molecular Weight (calculated)
19171.2 Da
IEP (calculated)
9.252
GRAVY (calculated)
-0.102
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRRLLLSA TILSYLLHGM ALVSVVASGV EEVSRDNVDL TKTTTLATTY THRKMLRLSH ETRVEPDRIG EKCKKSDIVV NQAATEPMPN GIPGYTVEIT
101: NQCMSGCNIS RIHVSCGWFS SAKLVNPRVF KRIHYDDCLV NNGKPLPYGS TLSFHYANTF PYRLAVAFVT CS
101: NQCMSGCNIS RIHVSCGWFS SAKLVNPRVF KRIHYDDCLV NNGKPLPYGS TLSFHYANTF PYRLAVAFVT CS
001: MNRRRLLVSA TLLSYLLYGM ALVSVEASGG EKLRDNLDLT KTTTSSPSIS HRKMLLLSPG TGKTERSVEP ERIGEKCKST DIVVNQAVTE PMPNGIPGYM
101: VEITNQCMSG CIISRIHINC GWFSSAKLIN PRVFKRIHYD DCLVNNGKPL PFGSTLSFHY ANTFPYHLSV AFVTCA
101: VEITNQCMSG CIISRIHINC GWFSSAKLIN PRVFKRIHYD DCLVNNGKPL PFGSTLSFHY ANTFPYHLSV AFVTCA
Arabidopsis Description
TPD1TPD1 [Source:UniProtKB/TrEMBL;Acc:A0A178V0R1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.