Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d000032_P001 | Maize | cytosol | 50.0 | 73.73 |
| KXG32362 | Sorghum | extracellular | 62.07 | 61.71 |
| OQU86773 | Sorghum | extracellular | 59.77 | 58.43 |
| Zm00001d033019_P001 | Maize | extracellular | 39.66 | 38.76 |
| Zm00001d014205_P001 | Maize | extracellular | 36.21 | 37.28 |
| Zm00001d023681_P001 | Maize | extracellular | 33.33 | 27.1 |
Protein Annotations
| EnsemblPlants:Zm00001d040600_P001 | EnsemblPlants:Zm00001d040600_T001 | EnsemblPlantsGene:Zm00001d040600 | PANTHER:PTHR33184 | PANTHER:PTHR33184:SF25 | PFscan:PS51257 |
| ProteinID:ONM31622.1 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI00084420AB | UniProt:A0A1D6MRL5 | MapMan:11.10.1.7.1 |
Description
Protein TAPETUM DETERMINANT 1
Coordinates
chr3:-:52648635..52649438
Molecular Weight (calculated)
18106.2 Da
IEP (calculated)
4.684
GRAVY (calculated)
0.130
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCPRERAAV ANVFIASLFL LAGQAAVSCH RPSPTVAVMH QAAHVRKLLN NTSTGGGHSR GAAAVASADD DDPCSEEVVE VFQGSAGSLP NGIPSYSVTI
101: TNTCLDCTVC DVHVSCGEFA STEVVDPSDF RRLSYGDCLV RNGGPIGPGE TISFQYSNSF VYKMDVAAVS CVDV
101: TNTCLDCTVC DVHVSCGEFA STEVVDPSDF RRLSYGDCLV RNGGPIGPGE TISFQYSNSF VYKMDVAAVS CVDV
001: MRMEHIYKFQ HWLFFIGLGV LLSLSLSVKA NDFEGSNDRR SIALKARSFV SINENRTALS RKLLLSPDIG DGTNRIGQDC SKDDIVLFQG STNPLPSGVP
101: SYTVEIFNSC VSDCNIAEIH VSCGWFSSVR LVNPRVFRRL DYDDCLVNDG QPLGPGQSLS FQYANSFSYP LSVASVSCF
101: SYTVEIFNSC VSDCNIAEIH VSCGWFSSVR LVNPRVFRRL DYDDCLVNDG QPLGPGQSLS FQYANSFSYP LSVASVSCF
Arabidopsis Description
TDL1TPD1 protein homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q1G3T1]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.