Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24973.1 | CDX70023 | AT5G07280.1 | 18250314 |
| AT4G24973.1 | CDX98990 | AT5G07280.1 | 18250314 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28026 | Canola | extracellular | 16.13 | 7.41 |
| CDY22781 | Canola | extracellular | 11.29 | 6.93 |
| AT4G24974.1 | Thale cress | extracellular | 14.52 | 6.82 |
| CDY07922 | Canola | extracellular | 14.52 | 6.82 |
| AT4G24973.1 | Thale cress | extracellular | 14.52 | 6.72 |
| CDY42551 | Canola | extracellular | 17.74 | 6.71 |
| CDY22773 | Canola | extracellular | 17.74 | 6.71 |
| AT4G24975.1 | Thale cress | extracellular | 14.52 | 6.67 |
| CDX90536 | Canola | extracellular | 16.13 | 6.37 |
| CDY09706 | Canola | extracellular | 16.13 | 6.37 |
| CDX86618 | Canola | extracellular | 12.9 | 6.15 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 16.13 | 5.85 |
| CDY53202 | Canola | extracellular | 12.9 | 5.84 |
| CDY69268 | Canola | extracellular | 12.9 | 5.84 |
| CDY22777 | Canola | endoplasmic reticulum, nucleus, plasma membrane, plastid | 16.13 | 5.78 |
| CDY52726 | Canola | extracellular | 12.9 | 5.48 |
| CDY34984 | Canola | extracellular | 9.68 | 5.41 |
| CDY69170 | Canola | extracellular | 11.29 | 5.26 |
| CDY22772 | Canola | extracellular | 11.29 | 5.19 |
| CDY44932 | Canola | extracellular | 12.9 | 5.13 |
| CDY09532 | Canola | extracellular | 9.68 | 4.62 |
| CDX86621 | Canola | extracellular | 9.68 | 4.62 |
| CDX70447 | Canola | extracellular | 11.29 | 4.52 |
| CDY42283 | Canola | extracellular | 11.29 | 4.49 |
| CDX70444 | Canola | extracellular | 12.9 | 4.12 |
| CDY70276 | Canola | nucleus | 8.06 | 3.23 |
| CDY69473 | Canola | endoplasmic reticulum, extracellular, vacuole | 11.29 | 3.14 |
| CDY69688 | Canola | extracellular | 8.06 | 2.82 |
Protein Annotations
| EnsemblPlants:CDY70063 | EnsemblPlantsGene:GSBRNA2T00096042001 | ProteinID:CDY70063 | ProteinID:CDY70063.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EE57D2 | UniProt:A0A078JR46 | MapMan:35.2 | : | : | : |
Description
BnaCnng66550DBnaCnng66550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JR46]
Coordinates
chrLK041059:+:1098..1283
Molecular Weight (calculated)
6822.2 Da
IEP (calculated)
9.835
GRAVY (calculated)
-0.050
Length
62 amino acids
Sequence
(BLAST)
(BLAST)
1: MLLATLSYTT QMDIPKRHLS LFILIIFITT YSSNAGTNNN IPVPYGPSPP TYASSSPYAK KN
001: MDIPKQYLSL FILIIFITTK LSQADHKNDI PVPNDPSSTN SVFPTSKRTV EINNDLGNQL TLLYHCKSKD DDLGNRTLQP GESWSFSFGR QFFGRTLYFC
101: SFSWPNESHS FDIYKDHRDS GGDNKCESDR CVWKIRRNGP CRFNDETKQF DLCYPWNKSL Y
101: SFSWPNESHS FDIYKDHRDS GGDNKCESDR CVWKIRRNGP CRFNDETKQF DLCYPWNKSL Y
Arabidopsis Description
SPH2S-protein homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JLQ5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.