Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY34984 | Canola | extracellular | 65.07 | 85.59 |
AT3G16970.1 | Thale cress | cytosol | 60.96 | 63.57 |
CDY22781 | Canola | extracellular | 36.3 | 52.48 |
AT3G16960.1 | Thale cress | endoplasmic reticulum, extracellular | 31.51 | 40.35 |
CDY07922 | Canola | extracellular | 35.62 | 39.39 |
CDY42551 | Canola | extracellular | 41.1 | 36.59 |
CDY22773 | Canola | extracellular | 41.1 | 36.59 |
CDY69170 | Canola | extracellular | 32.88 | 36.09 |
CDY28026 | Canola | extracellular | 32.19 | 34.81 |
CDY22772 | Canola | extracellular | 32.19 | 34.81 |
CDY42283 | Canola | extracellular | 36.99 | 34.62 |
CDX86618 | Canola | extracellular | 30.14 | 33.85 |
CDY09706 | Canola | extracellular | 36.3 | 33.76 |
CDX90536 | Canola | extracellular | 36.3 | 33.76 |
CDX70447 | Canola | extracellular | 35.62 | 33.55 |
CDY44932 | Canola | extracellular | 34.93 | 32.69 |
CDY22777 | Canola | endoplasmic reticulum, nucleus, plasma membrane, plastid | 38.36 | 32.37 |
CDY09532 | Canola | extracellular | 28.08 | 31.54 |
CDX86621 | Canola | extracellular | 28.08 | 31.54 |
CDY53202 | Canola | extracellular | 28.77 | 30.66 |
CDY69268 | Canola | extracellular | 28.77 | 30.66 |
CDY69688 | Canola | extracellular | 35.62 | 29.38 |
VIT_07s0005g05300.t01 | Wine grape | cytosol | 28.08 | 23.98 |
CDX70444 | Canola | extracellular | 28.77 | 21.65 |
CDY70276 | Canola | nucleus | 22.6 | 21.29 |
CDY69473 | Canola | endoplasmic reticulum, extracellular, vacuole | 27.4 | 17.94 |
CDY70063 | Canola | plastid | 5.48 | 12.9 |
Protein Annotations
EnsemblPlants:CDY52726 | EnsemblPlantsGene:GSBRNA2T00007664001 | InterPro:Self-incomp_S1 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF5 | PFAM:PF05938 |
ProteinID:CDY52726 | ProteinID:CDY52726.1 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EC6FD2 | UniProt:A0A078IS93 |
MapMan:35.1 | : | : | : | : | : |
Description
BnaC01g44110DBnaC01g44110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IS93]
Coordinates
chrLK033122:-:50021..50461
Molecular Weight (calculated)
16913.3 Da
IEP (calculated)
6.488
GRAVY (calculated)
-0.211
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLVVVIGL FIMSMCICVA LSHAQDDFSL TGFDNPRTTV VIINDLEGSL PLRYHCKSKD DDLGDRTMAP RGSWFFEFKP SIFGNTKFYC SFSWENELHY
101: LDIYKQDRDR LFAEFGCRRC EWKIHKNGAC KLNKDNGMFD VCLPWN
101: LDIYKQDRDR LFAEFGCRRC EWKIHKNGAC KLNKDNGMFD VCLPWN
001: MCVSVTISRG QKDSIPPTPT SGFDNPRTTV VIYNDLGGHL PLRYHCKSKN DDLGDRNMAV NGTWSFEFRP SVFGGTLFFC GFIWDKELHW FDIYKQSRDR
101: EFAEFGCRRC EWKIRKDGPC KLNKNSNMFD VCLPWNSQSL
101: EFAEFGCRRC EWKIRKDGPC KLNKNSNMFD VCLPWNSQSL
Arabidopsis Description
Plant self-incompatibility protein S1 family [Source:UniProtKB/TrEMBL;Acc:Q3EB54]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.