Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52726 | Canola | extracellular | 85.59 | 65.07 |
| CDY22781 | Canola | extracellular | 44.14 | 48.51 |
| AT3G16970.1 | Thale cress | cytosol | 57.66 | 45.71 |
| AT3G16960.1 | Thale cress | endoplasmic reticulum, extracellular | 44.14 | 42.98 |
| CDY42551 | Canola | extracellular | 42.34 | 28.66 |
| CDY22773 | Canola | extracellular | 42.34 | 28.66 |
| CDY69688 | Canola | extracellular | 45.05 | 28.25 |
| CDY07922 | Canola | extracellular | 32.43 | 27.27 |
| CDX90536 | Canola | extracellular | 36.04 | 25.48 |
| CDY09706 | Canola | extracellular | 36.04 | 25.48 |
| CDY22777 | Canola | endoplasmic reticulum, nucleus, plasma membrane, plastid | 38.74 | 24.86 |
| CDY42283 | Canola | extracellular | 34.23 | 24.36 |
| CDX86618 | Canola | extracellular | 27.93 | 23.85 |
| CDY44932 | Canola | extracellular | 33.33 | 23.72 |
| CDY69170 | Canola | extracellular | 27.93 | 23.31 |
| CDY22772 | Canola | extracellular | 27.03 | 22.22 |
| CDX70447 | Canola | extracellular | 30.63 | 21.94 |
| CDY53202 | Canola | extracellular | 27.03 | 21.9 |
| CDY69268 | Canola | extracellular | 27.03 | 21.9 |
| CDY28026 | Canola | extracellular | 26.13 | 21.48 |
| CDY09532 | Canola | extracellular | 24.32 | 20.77 |
| CDX86621 | Canola | extracellular | 24.32 | 20.77 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 23.42 | 15.2 |
| CDY70276 | Canola | nucleus | 20.72 | 14.84 |
| CDX70444 | Canola | extracellular | 24.32 | 13.92 |
| CDY69473 | Canola | endoplasmic reticulum, extracellular, vacuole | 23.42 | 11.66 |
| CDY70063 | Canola | plastid | 5.41 | 9.68 |
Protein Annotations
| EnsemblPlants:CDY34984 | EnsemblPlantsGene:GSBRNA2T00057572001 | InterPro:Self-incomp_S1 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF5 | PFAM:PF05938 |
| ProteinID:CDY34984 | ProteinID:CDY34984.1 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE2AE7 | UniProt:A0A078HC10 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA01g27500DBnaA01g27500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HC10]
Coordinates
chrLK032344:-:180899..181339
Molecular Weight (calculated)
12520.3 Da
IEP (calculated)
7.663
GRAVY (calculated)
-0.013
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLVVLICL LIMSMCICVA LSHAQDDFSL TGFDNPRTTV VIINDIAGYL PLRYHCKSKD DDLGDRTMAP RGSDRLFAEF GCRRCEWKIR KTGPCKLNKD
101: NGMFDVCLPW N
101: NGMFDVCLPW N
001: MCVSVTISRG QKDSIPPTPT SGFDNPRTTV VIYNDLGGHL PLRYHCKSKN DDLGDRNMAV NGTWSFEFRP SVFGGTLFFC GFIWDKELHW FDIYKQSRDR
101: EFAEFGCRRC EWKIRKDGPC KLNKNSNMFD VCLPWNSQSL
101: EFAEFGCRRC EWKIRKDGPC KLNKNSNMFD VCLPWNSQSL
Arabidopsis Description
Plant self-incompatibility protein S1 family [Source:UniProtKB/TrEMBL;Acc:Q3EB54]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.