Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69170 | Canola | extracellular | 78.52 | 79.7 |
| CDY22772 | Canola | extracellular | 77.04 | 77.04 |
| CDY07922 | Canola | extracellular | 64.44 | 65.91 |
| CDY42551 | Canola | extracellular | 51.85 | 42.68 |
| CDY22773 | Canola | extracellular | 51.85 | 42.68 |
| AT4G16195.1 | Thale cress | extracellular | 50.37 | 42.24 |
| CDY09706 | Canola | extracellular | 47.41 | 40.76 |
| CDX90536 | Canola | extracellular | 46.67 | 40.13 |
| CDY22777 | Canola | endoplasmic reticulum, nucleus, plasma membrane, plastid | 49.63 | 38.73 |
| CDY52726 | Canola | extracellular | 34.81 | 32.19 |
| CDX70447 | Canola | extracellular | 34.81 | 30.32 |
| CDX86618 | Canola | extracellular | 28.89 | 30.0 |
| CDY09532 | Canola | extracellular | 28.15 | 29.23 |
| CDX86621 | Canola | extracellular | 28.15 | 29.23 |
| CDY42283 | Canola | extracellular | 31.85 | 27.56 |
| CDY53202 | Canola | extracellular | 27.41 | 27.01 |
| CDY69268 | Canola | extracellular | 27.41 | 27.01 |
| CDY22781 | Canola | extracellular | 20.0 | 26.73 |
| CDY44932 | Canola | extracellular | 30.37 | 26.28 |
| CDY34984 | Canola | extracellular | 21.48 | 26.13 |
| CDY70276 | Canola | nucleus | 24.44 | 21.29 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 26.67 | 21.05 |
| CDX70444 | Canola | extracellular | 27.41 | 19.07 |
| CDY69473 | Canola | endoplasmic reticulum, extracellular, vacuole | 27.41 | 16.59 |
| CDY70063 | Canola | plastid | 7.41 | 16.13 |
| CDY69688 | Canola | extracellular | 20.74 | 15.82 |
Protein Annotations
| EnsemblPlants:CDY28026 | EnsemblPlantsGene:GSBRNA2T00038962001 | InterPro:Self-incomp_S1 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF10 | PFAM:PF05938 |
| ProteinID:CDY28026 | ProteinID:CDY28026.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE52F3 |
| UniProt:A0A078GRK1 | MapMan:35.1 | : | : | : | : |
Description
BnaC05g44280DBnaC05g44280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRK1]
Coordinates
chrLK032213:+:308455..308862
Molecular Weight (calculated)
16344.7 Da
IEP (calculated)
9.148
GRAVY (calculated)
-0.338
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIPKRYLLL FILIIFVTTD LSHAEIQVEI VNNLGSKMQF HCKSKDIDLR DQRLQPGGSW SFQFQRNFFG RSLFYCSFDL PNGRRWFDIY EEPRDFIIGF
101: SIHYLWRIGP YGLCKYTLYS NRERWNGGCF YWNKK
101: SIHYLWRIGP YGLCKYTLYS NRERWNGGCF YWNKK
001: MDIPKQYLSL FILIIFITTK LSQADHKNDI PVPNDPSSTN SVFPTSKRTV EINNDLGNQL TLLYHCKSKD DDLGNRTLQP GESWSFSFGR QFFGRTLYFC
101: SFSWPNESHS FDIYKDHRDS GGDNKCESDR CVWKIRRNGP CRFNDETKQF DLCYPWNKSL Y
101: SFSWPNESHS FDIYKDHRDS GGDNKCESDR CVWKIRRNGP CRFNDETKQF DLCYPWNKSL Y
Arabidopsis Description
SPH2S-protein homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JLQ5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.