Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09706 | Canola | extracellular | 59.01 | 60.51 |
| CDX90536 | Canola | extracellular | 59.01 | 60.51 |
| Bra012732.1-P | Field mustard | extracellular | 59.01 | 60.51 |
| CDY42551 | Canola | extracellular | 60.25 | 59.15 |
| CDY22773 | Canola | extracellular | 59.63 | 58.54 |
| CDY07922 | Canola | extracellular | 46.58 | 56.82 |
| CDY22777 | Canola | endoplasmic reticulum, nucleus, plasma membrane, plastid | 57.76 | 53.76 |
| CDY69170 | Canola | extracellular | 42.24 | 51.13 |
| CDY22772 | Canola | extracellular | 42.86 | 51.11 |
| CDY28026 | Canola | extracellular | 42.24 | 50.37 |
| AT3G17080.1 | Thale cress | extracellular | 39.75 | 47.76 |
| AT3G16970.1 | Thale cress | cytosol | 36.02 | 41.43 |
| AT4G24973.1 | Thale cress | extracellular | 32.3 | 38.81 |
| AT5G12060.1 | Thale cress | extracellular | 36.02 | 38.67 |
| AT4G24975.1 | Thale cress | extracellular | 31.68 | 37.78 |
| AT5G12070.1 | Thale cress | extracellular | 35.4 | 37.5 |
| AT4G24974.1 | Thale cress | extracellular | 29.19 | 35.61 |
| AT1G04645.1 | Thale cress | extracellular | 26.09 | 32.81 |
| AT3G16960.1 | Thale cress | endoplasmic reticulum, extracellular | 19.88 | 28.07 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 26.71 | 25.15 |
Protein Annotations
| MapMan:35.1 | EntrezGene:827312 | ProteinID:AEE83714.1 | EMBL:AL117321 | ArrayExpress:AT4G16195 | EnsemblPlantsGene:AT4G16195 |
| RefSeq:AT4G16195 | TAIR:AT4G16195 | RefSeq:AT4G16195-TAIR-G | EnsemblPlants:AT4G16195.1 | TAIR:AT4G16195.1 | Unigene:At.65389 |
| UniProt:F4JLQ5 | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0007154 | GO:GO:0008150 |
| GO:GO:0009856 | GO:GO:0009875 | GO:GO:0009987 | GO:GO:0060320 | RefSeq:NP_680709.1 | PFAM:PF05938 |
| PO:PO:0000005 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF5 | InterPro:Self-incomp_S1 | SignalP:SignalP-noTM | UniParc:UPI0000162A79 |
| SEG:seg | : | : | : | : | : |
Description
SPH2S-protein homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JLQ5]
Coordinates
chr4:-:9173165..9173650
Molecular Weight (calculated)
18810.9 Da
IEP (calculated)
7.369
GRAVY (calculated)
-0.740
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIPKQYLSL FILIIFITTK LSQADHKNDI PVPNDPSSTN SVFPTSKRTV EINNDLGNQL TLLYHCKSKD DDLGNRTLQP GESWSFSFGR QFFGRTLYFC
101: SFSWPNESHS FDIYKDHRDS GGDNKCESDR CVWKIRRNGP CRFNDETKQF DLCYPWNKSL Y
101: SFSWPNESHS FDIYKDHRDS GGDNKCESDR CVWKIRRNGP CRFNDETKQF DLCYPWNKSL Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.