Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G12060.1 | Thale cress | extracellular | 75.0 | 76.0 |
| CDX70447 | Canola | extracellular | 42.11 | 41.29 |
| AT3G17080.1 | Thale cress | extracellular | 36.18 | 41.04 |
| CDY42283 | Canola | extracellular | 38.82 | 37.82 |
| Bra020054.1-P | Field mustard | extracellular | 38.16 | 37.18 |
| CDY44932 | Canola | extracellular | 38.16 | 37.18 |
| AT3G16970.1 | Thale cress | cytosol | 34.21 | 37.14 |
| AT4G16195.1 | Thale cress | extracellular | 37.5 | 35.4 |
| AT4G24975.1 | Thale cress | extracellular | 30.92 | 34.81 |
| AT1G04645.1 | Thale cress | extracellular | 28.95 | 34.38 |
| AT4G24973.1 | Thale cress | extracellular | 30.26 | 34.33 |
| AT4G24974.1 | Thale cress | extracellular | 28.29 | 32.58 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 32.89 | 29.24 |
| CDX70444 | Canola | extracellular | 36.84 | 28.87 |
| AT3G16960.1 | Thale cress | endoplasmic reticulum, extracellular | 17.11 | 22.81 |
Protein Annotations
| MapMan:35.1 | EntrezGene:831080 | ProteinID:AED91758.1 | ArrayExpress:AT5G12070 | EnsemblPlantsGene:AT5G12070 | RefSeq:AT5G12070 |
| TAIR:AT5G12070 | RefSeq:AT5G12070-TAIR-G | EnsemblPlants:AT5G12070.1 | TAIR:AT5G12070.1 | Unigene:At.65506 | ProteinID:BAB10025.1 |
| UniProt:F4JZG1 | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0007154 | GO:GO:0008150 |
| GO:GO:0009856 | GO:GO:0009875 | GO:GO:0009987 | GO:GO:0060320 | RefSeq:NP_196768.2 | PFAM:PF05938 |
| PANTHER:PTHR31232 | PANTHER:PTHR31232:SF5 | InterPro:Self-incomp_S1 | SignalP:SignalP-noTM | UniParc:UPI00017394BE | : |
Description
SPH4S-protein homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:F4JZG1]
Coordinates
chr5:-:3896950..3897408
Molecular Weight (calculated)
17321.9 Da
IEP (calculated)
8.367
GRAVY (calculated)
-0.057
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTMLKTQVH VVVIYLLIQI AFSQVKPGSD LKWSTLKSVV TITNRLGDGS TLKLHCKSAD DDLGLKILAP NGSWSFKFRP SIVPGVTLFF CHFTWPGQSK
101: WFNIYDDDRD GVRMGIPCIY CIWDIGKYGP CRFSEIDDAF NICYDWNGNR RS
101: WFNIYDDDRD GVRMGIPCIY CIWDIGKYGP CRFSEIDDAF NICYDWNGNR RS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.