Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G24975.1 | Thale cress | extracellular | 69.4 | 68.89 |
| AT4G24974.1 | Thale cress | extracellular | 63.43 | 64.39 |
| AT3G17080.1 | Thale cress | extracellular | 35.82 | 35.82 |
| AT1G04645.1 | Thale cress | extracellular | 32.84 | 34.38 |
| AT4G16195.1 | Thale cress | extracellular | 38.81 | 32.3 |
| AT3G16970.1 | Thale cress | cytosol | 33.58 | 32.14 |
| AT5G12070.1 | Thale cress | extracellular | 34.33 | 30.26 |
| AT5G12060.1 | Thale cress | extracellular | 32.84 | 29.33 |
| AT3G16960.1 | Thale cress | endoplasmic reticulum, extracellular | 18.66 | 21.93 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 26.87 | 21.05 |
| CDY70063 | Canola | plastid | 6.72 | 14.52 |
Protein Annotations
| MapMan:35.1 | EntrezGene:6240286 | ProteinID:AEE84985.1 | EMBL:AL049657 | ArrayExpress:AT4G24973 | EnsemblPlantsGene:AT4G24973 |
| RefSeq:AT4G24973 | TAIR:AT4G24973 | RefSeq:AT4G24973-TAIR-G | EnsemblPlants:AT4G24973.1 | TAIR:AT4G24973.1 | Unigene:At.73480 |
| UniProt:B3H730 | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0007154 | GO:GO:0008150 |
| GO:GO:0009856 | GO:GO:0009875 | GO:GO:0009987 | GO:GO:0060320 | RefSeq:NP_001119049.1 | PFAM:PF05938 |
| PANTHER:PTHR31232 | PANTHER:PTHR31232:SF5 | InterPro:Self-incomp_S1 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001739424 |
Description
SPH18S-protein homolog 18 [Source:UniProtKB/Swiss-Prot;Acc:B3H730]
Coordinates
chr4:+:12840970..12841374
Molecular Weight (calculated)
15422.7 Da
IEP (calculated)
7.732
GRAVY (calculated)
-0.015
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MCPSSFRLIL SVILIAFLFV GLCEAHRHIN VDIINDIGPN VQLGLHCKSK GKDLGPQSLA PHQHWGFTAS LNVWETTLFF CHFVWENQSR WFDILKEKRD
101: TIVCKYHPCV WSIRPSGPCR LTDHEKCYPC NADI
101: TIVCKYHPCV WSIRPSGPCR LTDHEKCYPC NADI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.