Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G16970.1 | Thale cress | cytosol | 52.99 | 50.71 |
| CDY22781 | Canola | extracellular | 35.07 | 46.53 |
| AT4G16195.1 | Thale cress | extracellular | 47.76 | 39.75 |
| AT5G12060.1 | Thale cress | extracellular | 41.79 | 37.33 |
| AT5G12070.1 | Thale cress | extracellular | 41.04 | 36.18 |
| AT4G24973.1 | Thale cress | extracellular | 35.82 | 35.82 |
| AT4G24975.1 | Thale cress | extracellular | 35.82 | 35.56 |
| AT3G16960.1 | Thale cress | endoplasmic reticulum, extracellular | 28.36 | 33.33 |
| AT1G04645.1 | Thale cress | extracellular | 30.6 | 32.03 |
| AT4G24974.1 | Thale cress | extracellular | 29.85 | 30.3 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 35.07 | 27.49 |
| CDY69688 | Canola | extracellular | 32.84 | 24.86 |
Protein Annotations
| MapMan:35.1 | EntrezGene:820965 | ProteinID:AEE75901.1 | ArrayExpress:AT3G17080 | EnsemblPlantsGene:AT3G17080 | RefSeq:AT3G17080 |
| TAIR:AT3G17080 | RefSeq:AT3G17080-TAIR-G | EnsemblPlants:AT3G17080.1 | TAIR:AT3G17080.1 | Unigene:At.38794 | ProteinID:BAA94986.1 |
| EMBL:DQ446668 | GO:GO:0008150 | RefSeq:NP_188333.1 | PFAM:PF05938 | PO:PO:0000191 | PANTHER:PTHR31232 |
| PANTHER:PTHR31232:SF5 | UniProt:Q9LSN9 | InterPro:Self-incomp_S1 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000A1D64 |
Description
Plant self-incompatibility protein S1 family [Source:UniProtKB/TrEMBL;Acc:Q9LSN9]
Coordinates
chr3:+:5825289..5825867
Molecular Weight (calculated)
15641.8 Da
IEP (calculated)
8.480
GRAVY (calculated)
-0.301
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLETCLLF FVMVMFMSAI MSRASTSVVI YNDLGGGLPL RHHCKSREDD LGYQSLAPGR SWSFGFTPDI FGRTLFYCRF SWGAESHIFD IYKQSRDKEF
101: QEFGCKKCEW KIRKNGPCKF YKKTGMFDHC YSWD
101: QEFGCKKCEW KIRKNGPCKF YKKTGMFDHC YSWD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.