Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032497.1-P | Field mustard | cytosol | 46.09 | 57.84 |
| CDY09532 | Canola | extracellular | 53.12 | 52.31 |
| CDX86621 | Canola | extracellular | 53.12 | 52.31 |
| Bra030578.1-P | Field mustard | extracellular | 53.12 | 52.31 |
| CDX86618 | Canola | extracellular | 52.34 | 51.54 |
| CDY69268 | Canola | extracellular | 53.12 | 49.63 |
| CDY53202 | Canola | extracellular | 53.12 | 49.63 |
| CDY70276 | Canola | nucleus | 44.53 | 36.77 |
| Bra030579.1-P | Field mustard | nucleus | 44.53 | 36.77 |
| AT4G24975.1 | Thale cress | extracellular | 38.28 | 36.3 |
| AT4G24974.1 | Thale cress | extracellular | 36.72 | 35.61 |
| AT3G16970.1 | Thale cress | cytosol | 35.94 | 32.86 |
| AT4G24973.1 | Thale cress | extracellular | 34.38 | 32.84 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 41.41 | 30.99 |
| AT3G17080.1 | Thale cress | extracellular | 32.03 | 30.6 |
| AT5G12070.1 | Thale cress | extracellular | 34.38 | 28.95 |
| CDY69473 | Canola | endoplasmic reticulum, extracellular, vacuole | 48.44 | 27.8 |
| AT5G12060.1 | Thale cress | extracellular | 31.25 | 26.67 |
| AT4G16195.1 | Thale cress | extracellular | 32.81 | 26.09 |
| AT3G16960.1 | Thale cress | endoplasmic reticulum, extracellular | 21.09 | 23.68 |
Protein Annotations
| MapMan:35.1 | EntrezGene:839459 | UniProt:A0A178W3U9 | ProteinID:AAB80626.1 | ProteinID:AEE27728.1 | ArrayExpress:AT1G04645 |
| EnsemblPlantsGene:AT1G04645 | RefSeq:AT1G04645 | TAIR:AT1G04645 | RefSeq:AT1G04645-TAIR-G | EnsemblPlants:AT1G04645.1 | TAIR:AT1G04645.1 |
| EMBL:AY086222 | Unigene:At.42440 | EMBL:BT026094 | EMBL:DQ446227 | EMBL:DQ652822 | GO:GO:0000003 |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0007154 | GO:GO:0008150 | GO:GO:0009856 | GO:GO:0009875 |
| GO:GO:0009987 | GO:GO:0060320 | RefSeq:NP_563713.1 | UniProt:O23020 | ProteinID:OAP12938.1 | PFAM:PF05938 |
| PO:PO:0000084 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0025022 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF10 |
| InterPro:Self-incomp_S1 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000009C78D | SEG:seg | : |
Description
SPH5S-protein homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:O23020]
Coordinates
chr1:-:1293770..1294263
Molecular Weight (calculated)
14904.0 Da
IEP (calculated)
8.283
GRAVY (calculated)
-0.181
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKVSIVCFF FFLLFGSGYG GLPPFWRATV VTMTNLIGGP PLTIHCKSKQ DDLGIHVVPF KQEYHFKFQP NLWKSTLFFC SFQWDSQFKS FDIYDAQRDQ
101: GICDDCQWEI KPDGPCRLGK KAKCFPWK
101: GICDDCQWEI KPDGPCRLGK KAKCFPWK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.