Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70276 | Canola | nucleus | 100.0 | 100.0 |
| Bra030578.1-P | Field mustard | extracellular | 50.32 | 60.0 |
| Bra032497.1-P | Field mustard | cytosol | 36.13 | 54.9 |
| AT1G04645.1 | Thale cress | extracellular | 36.77 | 44.53 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 27.1 | 24.56 |
| Bra020054.1-P | Field mustard | extracellular | 22.58 | 22.44 |
| Bra012732.1-P | Field mustard | extracellular | 18.71 | 18.47 |
Protein Annotations
| EnsemblPlants:Bra030579.1 | EnsemblPlants:Bra030579.1-P | EnsemblPlantsGene:Bra030579 | InterPro:Self-incomp_S1 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF10 |
| PFAM:PF05938 | UniParc:UPI00025456ED | UniProt:M4EP59 | MapMan:35.1 | : | : |
Description
AT1G04645 (E=1e-031) | self-incompatibility protein-related
Coordinates
chrA08:+:21235357..21236719
Molecular Weight (calculated)
18048.5 Da
IEP (calculated)
9.514
GRAVY (calculated)
-0.849
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNNIGGPVL TVHCKSKDDD LGVHMVASKT DYHFSFQPNI WKTTLFFCSF QWNDQVKQFD IFDAPRDQDD GYKFNWTIKP DSPCKIAHDQ NRKATVQKLL
101: EGRKQQRSME VEKQSNKRRK LPEGICRGVE LLQKGMKRIN EGLSEMSSDA FKRVY
101: EGRKQQRSME VEKQSNKRRK LPEGICRGVE LLQKGMKRIN EGLSEMSSDA FKRVY
001: MEKVSIVCFF FFLLFGSGYG GLPPFWRATV VTMTNLIGGP PLTIHCKSKQ DDLGIHVVPF KQEYHFKFQP NLWKSTLFFC SFQWDSQFKS FDIYDAQRDQ
101: GICDDCQWEI KPDGPCRLGK KAKCFPWK
101: GICDDCQWEI KPDGPCRLGK KAKCFPWK
Arabidopsis Description
SPH5S-protein homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:O23020]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.