Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86621 | Canola | extracellular | 91.54 | 91.54 |
| CDY09532 | Canola | extracellular | 91.54 | 91.54 |
| Bra032497.1-P | Field mustard | cytosol | 50.0 | 63.73 |
| AT1G04645.1 | Thale cress | extracellular | 52.31 | 53.12 |
| Bra030579.1-P | Field mustard | nucleus | 60.0 | 50.32 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 36.15 | 27.49 |
| Bra020054.1-P | Field mustard | extracellular | 30.77 | 25.64 |
| Bra012732.1-P | Field mustard | extracellular | 26.15 | 21.66 |
Protein Annotations
| EnsemblPlants:Bra030578.1 | EnsemblPlants:Bra030578.1-P | EnsemblPlantsGene:Bra030578 | InterPro:Self-incomp_S1 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF10 |
| PFAM:PF05938 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00025456EE | UniProt:M4EP58 | MapMan:35.1 |
Description
AT1G04645 (E=5e-045) | self-incompatibility protein-related
Coordinates
chrA08:+:21237466..21237858
Molecular Weight (calculated)
15076.3 Da
IEP (calculated)
9.676
GRAVY (calculated)
-0.298
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKSPKLCLA FLIMVLLFGL SHGLPPFWPR TDLTMTNNLG GPVLTVHCKS KDNDLGVHMV AAKTDYHFSF QPNIWRTTLF FCSFQWNNQV KRFDIFDATR
101: DQDDGYKFNW TIKPDGPCKL GKNAKCFPWK
101: DQDDGYKFNW TIKPDGPCKL GKNAKCFPWK
001: MEKVSIVCFF FFLLFGSGYG GLPPFWRATV VTMTNLIGGP PLTIHCKSKQ DDLGIHVVPF KQEYHFKFQP NLWKSTLFFC SFQWDSQFKS FDIYDAQRDQ
101: GICDDCQWEI KPDGPCRLGK KAKCFPWK
101: GICDDCQWEI KPDGPCRLGK KAKCFPWK
Arabidopsis Description
SPH5S-protein homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:O23020]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.