Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- plastid 1
- plasma membrane 2
- golgi 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_16s0100g00710.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24973.1 | VIT_16s0100g00710.t01 | AT5G07280.1 | 18250314 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G04645.1 | Thale cress | extracellular | 30.99 | 41.41 |
| Bra032497.1-P | Field mustard | cytosol | 23.98 | 40.2 |
| VIT_19s0015g01970.t01 | Wine grape | extracellular | 39.77 | 40.0 |
| CDX86621 | Canola | extracellular | 28.66 | 37.69 |
| CDY09532 | Canola | extracellular | 28.66 | 37.69 |
| VIT_19s0015g02010.t01 | Wine grape | extracellular | 34.5 | 36.65 |
| Bra030578.1-P | Field mustard | extracellular | 27.49 | 36.15 |
| CDX86618 | Canola | extracellular | 27.49 | 36.15 |
| VIT_19s0015g01960.t01 | Wine grape | extracellular | 35.67 | 35.47 |
| AT3G17080.1 | Thale cress | extracellular | 27.49 | 35.07 |
| CDY69268 | Canola | extracellular | 27.49 | 34.31 |
| CDY53202 | Canola | extracellular | 27.49 | 34.31 |
| CDX70447 | Canola | extracellular | 30.99 | 34.19 |
| AT5G12070.1 | Thale cress | extracellular | 29.24 | 32.89 |
| AT3G16970.1 | Thale cress | cytosol | 26.32 | 32.14 |
| VIT_19s0015g01980.t01 | Wine grape | plasma membrane | 34.5 | 31.89 |
| CDY22781 | Canola | extracellular | 18.71 | 31.68 |
| AT4G24974.1 | Thale cress | extracellular | 23.98 | 31.06 |
| AT5G12060.1 | Thale cress | extracellular | 26.9 | 30.67 |
| Bra020054.1-P | Field mustard | extracellular | 26.9 | 29.49 |
| CDY44932 | Canola | extracellular | 26.9 | 29.49 |
| CDY42283 | Canola | extracellular | 26.9 | 29.49 |
| CDY52726 | Canola | extracellular | 23.98 | 28.08 |
| AT4G24975.1 | Thale cress | extracellular | 21.64 | 27.41 |
| CDY07922 | Canola | extracellular | 21.05 | 27.27 |
| CDY70276 | Canola | nucleus | 24.56 | 27.1 |
| Bra030579.1-P | Field mustard | nucleus | 24.56 | 27.1 |
| CDY69170 | Canola | extracellular | 21.05 | 27.07 |
| AT4G24973.1 | Thale cress | extracellular | 21.05 | 26.87 |
| CDY22773 | Canola | extracellular | 25.73 | 26.83 |
| CDY42551 | Canola | extracellular | 25.73 | 26.83 |
| AT4G16195.1 | Thale cress | extracellular | 25.15 | 26.71 |
| CDY28026 | Canola | extracellular | 21.05 | 26.67 |
| CDY22772 | Canola | extracellular | 21.05 | 26.67 |
| CDX90536 | Canola | extracellular | 23.39 | 25.48 |
| Bra012732.1-P | Field mustard | extracellular | 23.39 | 25.48 |
| CDY22777 | Canola | endoplasmic reticulum, nucleus, plasma membrane, plastid | 25.73 | 25.43 |
| CDY09706 | Canola | extracellular | 22.81 | 24.84 |
| CDY34984 | Canola | extracellular | 15.2 | 23.42 |
| CDX70444 | Canola | extracellular | 26.32 | 23.2 |
| AT3G16960.1 | Thale cress | endoplasmic reticulum, extracellular | 15.2 | 22.81 |
| CDY69473 | Canola | endoplasmic reticulum, extracellular, vacuole | 28.66 | 21.97 |
| CDY70063 | Canola | plastid | 5.85 | 16.13 |
| CDY69688 | Canola | extracellular | 16.37 | 15.82 |
Protein Annotations
| ArrayExpress:VIT_07s0005g05300 | EMBL:FN596502 | EnsemblPlants:VIT_07s0005g05300.t01 | EnsemblPlantsGene:VIT_07s0005g05300 | InterPro:Self-incomp_S1 | PANTHER:PTHR31232 |
| PANTHER:PTHR31232:SF5 | PFAM:PF05938 | ProteinID:CCB60233 | ProteinID:CCB60233.1 | UniParc:UPI000210947E | UniProt:F6HZW7 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7:+:9287184..9296931
Molecular Weight (calculated)
19694.6 Da
IEP (calculated)
8.119
GRAVY (calculated)
-0.467
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWPKESRDM DYPLWTRLYM FVVGVTNPKD GTFHLVTLSQ GSLLPILQKT HVRLTNLLGE GSSLTIHCKS KDDDLGVHVL PFKGSFEWSF KPNFFVKNTL
101: FFCNIQWQGK SMYFNSYDEE RDLDGCGKYC YWDVTLKGPC LLKHKGGYDF CSDWPNKKSV GIKQGDDKNM P
101: FFCNIQWQGK SMYFNSYDEE RDLDGCGKYC YWDVTLKGPC LLKHKGGYDF CSDWPNKKSV GIKQGDDKNM P
001: MEKVSIVCFF FFLLFGSGYG GLPPFWRATV VTMTNLIGGP PLTIHCKSKQ DDLGIHVVPF KQEYHFKFQP NLWKSTLFFC SFQWDSQFKS FDIYDAQRDQ
101: GICDDCQWEI KPDGPCRLGK KAKCFPWK
101: GICDDCQWEI KPDGPCRLGK KAKCFPWK
Arabidopsis Description
SPH5S-protein homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:O23020]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.