Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42551 | Canola | extracellular | 56.65 | 59.76 |
| CDY22773 | Canola | extracellular | 56.65 | 59.76 |
| CDY07922 | Canola | extracellular | 45.09 | 59.09 |
| AT4G16195.1 | Thale cress | extracellular | 53.76 | 57.76 |
| CDX90536 | Canola | extracellular | 48.55 | 53.5 |
| CDY09706 | Canola | extracellular | 48.55 | 53.5 |
| CDY22772 | Canola | extracellular | 41.62 | 53.33 |
| CDY69170 | Canola | extracellular | 40.46 | 52.63 |
| CDY28026 | Canola | extracellular | 38.73 | 49.63 |
| CDY22781 | Canola | extracellular | 23.7 | 40.59 |
| CDY34984 | Canola | extracellular | 24.86 | 38.74 |
| CDY52726 | Canola | extracellular | 32.37 | 38.36 |
| CDX70447 | Canola | extracellular | 30.64 | 34.19 |
| CDY44932 | Canola | extracellular | 30.06 | 33.33 |
| CDY42283 | Canola | extracellular | 29.48 | 32.69 |
| CDY53202 | Canola | extracellular | 25.43 | 32.12 |
| CDY69268 | Canola | extracellular | 24.86 | 31.39 |
| CDX86618 | Canola | extracellular | 22.54 | 30.0 |
| CDY09532 | Canola | extracellular | 21.97 | 29.23 |
| CDX86621 | Canola | extracellular | 21.97 | 29.23 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 25.43 | 25.73 |
| CDY69688 | Canola | extracellular | 23.12 | 22.6 |
| CDY70276 | Canola | nucleus | 19.65 | 21.94 |
| CDX70444 | Canola | extracellular | 23.12 | 20.62 |
| CDY69473 | Canola | endoplasmic reticulum, extracellular, vacuole | 21.39 | 16.59 |
| CDY70063 | Canola | plastid | 5.78 | 16.13 |
Protein Annotations
| EnsemblPlants:CDY22777 | EnsemblPlantsGene:GSBRNA2T00021110001 | InterPro:Self-incomp_S1 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF5 | PFAM:PF05938 |
| ProteinID:CDY22777 | ProteinID:CDY22777.1 | SEG:seg | UniParc:UPI0004EEE828 | UniProt:A0A078GCI6 | MapMan:35.1 |
Description
BnaA08g06070DBnaA08g06070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCI6]
Coordinates
chrLK032135:-:587435..587956
Molecular Weight (calculated)
19982.8 Da
IEP (calculated)
8.754
GRAVY (calculated)
-0.201
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLATLSYTT QMDIPKRHLS LFILIIFITT YSSNAGTNNN IPVPYGPSPP TYASSSPYAK KTVEIINDIG SIVSYHCKSK DDDFGVRSLQ VDSSWSFSFG
101: RQIFGRSLFF CYFVLPKIGS YWFDIYKEPR DSSGEFWCNN CVWKIRPLGP CRFNKITHEF DLCYPWNKNK SLY
101: RQIFGRSLFF CYFVLPKIGS YWFDIYKEPR DSSGEFWCNN CVWKIRPLGP CRFNKITHEF DLCYPWNKNK SLY
001: MDIPKQYLSL FILIIFITTK LSQADHKNDI PVPNDPSSTN SVFPTSKRTV EINNDLGNQL TLLYHCKSKD DDLGNRTLQP GESWSFSFGR QFFGRTLYFC
101: SFSWPNESHS FDIYKDHRDS GGDNKCESDR CVWKIRRNGP CRFNDETKQF DLCYPWNKSL Y
101: SFSWPNESHS FDIYKDHRDS GGDNKCESDR CVWKIRRNGP CRFNDETKQF DLCYPWNKSL Y
Arabidopsis Description
SPH2S-protein homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JLQ5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.