Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70447 | Canola | extracellular | 44.85 | 56.13 |
| CDY42283 | Canola | extracellular | 44.85 | 55.77 |
| CDY44932 | Canola | extracellular | 43.81 | 54.49 |
| AT5G12060.1 | Thale cress | extracellular | 28.87 | 37.33 |
| AT5G12070.1 | Thale cress | extracellular | 28.87 | 36.84 |
| CDY09532 | Canola | extracellular | 23.71 | 35.38 |
| CDX86621 | Canola | extracellular | 23.71 | 35.38 |
| CDX86618 | Canola | extracellular | 23.2 | 34.62 |
| CDY53202 | Canola | extracellular | 24.23 | 34.31 |
| CDY69268 | Canola | extracellular | 23.71 | 33.58 |
| CDY07922 | Canola | extracellular | 21.13 | 31.06 |
| CDY69170 | Canola | extracellular | 20.62 | 30.08 |
| CDY22772 | Canola | extracellular | 20.62 | 29.63 |
| CDY52726 | Canola | extracellular | 21.65 | 28.77 |
| CDY09706 | Canola | extracellular | 22.68 | 28.03 |
| CDY70276 | Canola | nucleus | 22.16 | 27.74 |
| CDY42551 | Canola | extracellular | 23.2 | 27.44 |
| CDY28026 | Canola | extracellular | 19.07 | 27.41 |
| CDX90536 | Canola | extracellular | 22.16 | 27.39 |
| CDY22773 | Canola | extracellular | 22.68 | 26.83 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 23.2 | 26.32 |
| CDY34984 | Canola | extracellular | 13.92 | 24.32 |
| CDY22777 | Canola | endoplasmic reticulum, nucleus, plasma membrane, plastid | 20.62 | 23.12 |
| CDY22781 | Canola | extracellular | 11.34 | 21.78 |
| CDY69473 | Canola | endoplasmic reticulum, extracellular, vacuole | 24.23 | 21.08 |
| CDY69688 | Canola | extracellular | 12.37 | 13.56 |
| CDY70063 | Canola | plastid | 4.12 | 12.9 |
Protein Annotations
| EnsemblPlants:CDX70444 | EnsemblPlantsGene:GSBRNA2T00140261001 | InterPro:Self-incomp_S1 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF5 | PFAM:PF05938 |
| ProteinID:CDX70444 | ProteinID:CDX70444.1 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0004EE9445 | MapMan:24.3.5 |
Description
BnaC03g05280D
Coordinates
chrLK031791:-:448344..449793
Molecular Weight (calculated)
22448.9 Da
IEP (calculated)
9.019
GRAVY (calculated)
-0.313
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKWQVYVMV ISIFVHLAAS RAESIFDRER KVEITNKLGG GLTLTLHCKS KDDDLGVQTF APDSSWSFKF SPAVFKTTLF FCNFKWGGES HWFDIYDDNR
101: DGDVFLKLDN DKVYYPNALL ATKPISNYFR SPDMSETVEF SIAFSTPISK TAHLKERITD WSRIRIIGHL VVVKDIENMN KLKMPSRKDI QNYS
101: DGDVFLKLDN DKVYYPNALL ATKPISNYFR SPDMSETVEF SIAFSTPISK TAHLKERITD WSRIRIIGHL VVVKDIENMN KLKMPSRKDI QNYS
001: MKNILKTQVH VVVIYLLIKI AFSQVKTDFD VNWSTSKMVR ITNRLGDGLT LNLHCKSADD DLGLKILAPN GSWSFKFRTS IVGTTLFYCH FTWPGQSKRF
101: DIYDDDRDGV RSHISCINCI WDISIQGPCM FSESDHAFNI CYDWNGNLRT
101: DIYDDDRDGV RSHISCINCI WDISIQGPCM FSESDHAFNI CYDWNGNLRT
Arabidopsis Description
SPH3S-protein homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMQ4]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.