Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34984 | Canola | extracellular | 48.51 | 44.14 |
| CDY52726 | Canola | extracellular | 52.48 | 36.3 |
| AT3G17080.1 | Thale cress | extracellular | 46.53 | 35.07 |
| CDY69688 | Canola | extracellular | 60.4 | 34.46 |
| CDY07922 | Canola | extracellular | 32.67 | 25.0 |
| CDX86618 | Canola | extracellular | 30.69 | 23.85 |
| CDY22777 | Canola | endoplasmic reticulum, nucleus, plasma membrane, plastid | 40.59 | 23.7 |
| CDX90536 | Canola | extracellular | 36.63 | 23.57 |
| CDY09706 | Canola | extracellular | 36.63 | 23.57 |
| CDY22773 | Canola | extracellular | 36.63 | 22.56 |
| CDY42551 | Canola | extracellular | 36.63 | 22.56 |
| CDY09532 | Canola | extracellular | 28.71 | 22.31 |
| CDX86621 | Canola | extracellular | 28.71 | 22.31 |
| CDY53202 | Canola | extracellular | 28.71 | 21.17 |
| CDY69268 | Canola | extracellular | 28.71 | 21.17 |
| CDY69170 | Canola | extracellular | 27.72 | 21.05 |
| CDY22772 | Canola | extracellular | 27.72 | 20.74 |
| CDY44932 | Canola | extracellular | 31.68 | 20.51 |
| CDY28026 | Canola | extracellular | 26.73 | 20.0 |
| CDX70447 | Canola | extracellular | 30.69 | 20.0 |
| CDY42283 | Canola | extracellular | 30.69 | 19.87 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 31.68 | 18.71 |
| CDY69473 | Canola | endoplasmic reticulum, extracellular, vacuole | 27.72 | 12.56 |
| CDY70276 | Canola | nucleus | 18.81 | 12.26 |
| CDX70444 | Canola | extracellular | 21.78 | 11.34 |
| CDY70063 | Canola | plastid | 6.93 | 11.29 |
Protein Annotations
| EnsemblPlants:CDY22781 | EnsemblPlantsGene:GSBRNA2T00021116001 | InterPro:Self-incomp_S1 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF5 | PFAM:PF05938 |
| PFscan:PS51257 | ProteinID:CDY22781 | ProteinID:CDY22781.1 | SignalP:SignalP-noTM | UniParc:UPI0004EF4623 | UniProt:A0A078GBM2 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA08g06110DBnaA08g06110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBM2]
Coordinates
chrLK032135:-:621076..621489
Molecular Weight (calculated)
11448.9 Da
IEP (calculated)
8.137
GRAVY (calculated)
-0.287
Length
101 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSLKHHIVF FITMIMFMNA TMSCAQKTTV VIHNDLGSGL SLGYHCQSGD NDLGYGGLGQ KRDKEFEKFG CTHCEWKIRK NGPCKLNKIN NMFDVCLPWN
101: S
101: S
001: MGALAELVAL IIVMCASVTM SLAQNPMASP PSVENPNTTV VIHNALSGYW PMAYHCASKD VDFGLRRMLA ERDQESAMFG CKRCEWKIRE EGPCKLNKKT
101: GMFDLCPPWD SQNI
101: GMFDLCPPWD SQNI
Arabidopsis Description
Plant self-incompatibility protein S1 family protein [Source:UniProtKB/TrEMBL;Acc:F4J3Y5]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.