Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69170 | Canola | extracellular | 66.67 | 66.17 |
| CDY22772 | Canola | extracellular | 67.42 | 65.93 |
| CDY28026 | Canola | extracellular | 65.91 | 64.44 |
| AT4G16195.1 | Thale cress | extracellular | 56.82 | 46.58 |
| CDY22777 | Canola | endoplasmic reticulum, nucleus, plasma membrane, plastid | 59.09 | 45.09 |
| CDY42551 | Canola | extracellular | 54.55 | 43.9 |
| CDY22773 | Canola | extracellular | 54.55 | 43.9 |
| CDY09706 | Canola | extracellular | 50.76 | 42.68 |
| CDX90536 | Canola | extracellular | 50.0 | 42.04 |
| CDY52726 | Canola | extracellular | 39.39 | 35.62 |
| CDY22781 | Canola | extracellular | 25.0 | 32.67 |
| CDY34984 | Canola | extracellular | 27.27 | 32.43 |
| CDY09532 | Canola | extracellular | 31.06 | 31.54 |
| CDX86621 | Canola | extracellular | 31.06 | 31.54 |
| CDX86618 | Canola | extracellular | 30.3 | 30.77 |
| CDY42283 | Canola | extracellular | 35.61 | 30.13 |
| CDX70447 | Canola | extracellular | 34.85 | 29.68 |
| CDY44932 | Canola | extracellular | 34.09 | 28.85 |
| CDY53202 | Canola | extracellular | 29.55 | 28.47 |
| CDY69268 | Canola | extracellular | 29.55 | 28.47 |
| CDY70276 | Canola | nucleus | 26.52 | 22.58 |
| CDX70444 | Canola | extracellular | 31.06 | 21.13 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 27.27 | 21.05 |
| CDY69688 | Canola | extracellular | 25.0 | 18.64 |
| CDY69473 | Canola | endoplasmic reticulum, extracellular, vacuole | 30.3 | 17.94 |
| CDY70063 | Canola | plastid | 6.82 | 14.52 |
Protein Annotations
| EnsemblPlants:CDY07922 | EnsemblPlantsGene:GSBRNA2T00125123001 | InterPro:Self-incomp_S1 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF5 | PFAM:PF05938 |
| ProteinID:CDY07922 | ProteinID:CDY07922.1 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EEE85A | UniProt:A0A078F4C9 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC03g36010DBnaC03g36010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4C9]
Coordinates
chrLK031982:-:124582..124980
Molecular Weight (calculated)
15975.2 Da
IEP (calculated)
8.932
GRAVY (calculated)
-0.384
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIPKPYLFL FILIIFVTTD LSHAQIELRI INDLGSIVNL HCKSKDIDLG NQRLQPGRSW SFHFQRNLFG RSLFFCSFDL PNGRRWFDIY KEPRDNLFGY
101: WWLQYSWKIK PHGPCRSNTN FMFEDCYNWN KN
101: WWLQYSWKIK PHGPCRSNTN FMFEDCYNWN KN
001: MCPSSFRLIL SVILIAFLFV GLCEAHRHIN VDIINDIGPN VQLGLHCKSK GKDLGPQSLA PHQHWGFTAS LNVWETTLFF CHFVWENQSR WFDILKEKRD
101: TIVCKYHPCV WSIRPSGPCR LTDHEKCYPC NADI
101: TIVCKYHPCV WSIRPSGPCR LTDHEKCYPC NADI
Arabidopsis Description
SPH18S-protein homolog 18 [Source:UniProtKB/Swiss-Prot;Acc:B3H730]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.