Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86621 | Canola | extracellular | 53.36 | 91.54 |
| CDY09532 | Canola | extracellular | 53.36 | 91.54 |
| CDX86618 | Canola | extracellular | 43.5 | 74.62 |
| CDY69268 | Canola | extracellular | 35.43 | 57.66 |
| CDY53202 | Canola | extracellular | 35.43 | 57.66 |
| CDY70276 | Canola | nucleus | 35.87 | 51.61 |
| AT1G04645.1 | Thale cress | extracellular | 27.8 | 48.44 |
| CDX70447 | Canola | extracellular | 21.52 | 30.97 |
| CDY07922 | Canola | extracellular | 17.94 | 30.3 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 21.97 | 28.66 |
| CDY42283 | Canola | extracellular | 19.73 | 28.21 |
| CDY69170 | Canola | extracellular | 16.59 | 27.82 |
| CDY22781 | Canola | extracellular | 12.56 | 27.72 |
| CDY28026 | Canola | extracellular | 16.59 | 27.41 |
| CDY22772 | Canola | extracellular | 16.59 | 27.41 |
| CDY52726 | Canola | extracellular | 17.94 | 27.4 |
| CDY44932 | Canola | extracellular | 18.83 | 26.92 |
| CDX70444 | Canola | extracellular | 21.08 | 24.23 |
| CDY34984 | Canola | extracellular | 11.66 | 23.42 |
| CDY22773 | Canola | extracellular | 16.14 | 21.95 |
| CDY22777 | Canola | endoplasmic reticulum, nucleus, plasma membrane, plastid | 16.59 | 21.39 |
| CDY42551 | Canola | extracellular | 15.7 | 21.34 |
| CDY09706 | Canola | extracellular | 14.8 | 21.02 |
| CDX90536 | Canola | extracellular | 14.8 | 21.02 |
| CDY69688 | Canola | extracellular | 12.56 | 15.82 |
| CDY70063 | Canola | plastid | 3.14 | 11.29 |
Protein Annotations
| EnsemblPlants:CDY69473 | EnsemblPlantsGene:GSBRNA2T00088134001 | InterPro:Self-incomp_S1 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF10 | PFAM:PF05938 |
| ProteinID:CDY69473 | ProteinID:CDY69473.1 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE3769 | UniProt:A0A078JPG9 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaCnng63690DBnaCnng63690D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JPG9]
Coordinates
chrLK039523:+:421..4063
Molecular Weight (calculated)
25917.8 Da
IEP (calculated)
7.221
GRAVY (calculated)
-0.511
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNSPKFCVA FLIMVLLFGL SHELPPFWPR TDLTMTNNLG GPVLTVHCKS KDNDLGVHMV AAKTDYHFSF QPNIWKTTLF FCSFQWNNQV KQFDIFDAPR
101: DQDDGYKFNW TIKPDGPCKL GEFSESKDGV VSLATFPDIH PDSREGRPLF GPRIHPSSMS QPLPAYLRRR SQLQHWITEF SKSYDDQTLQ NHQPLFHHLI
201: HPFHNNHQLD YLQAPEHLIS DKV
101: DQDDGYKFNW TIKPDGPCKL GEFSESKDGV VSLATFPDIH PDSREGRPLF GPRIHPSSMS QPLPAYLRRR SQLQHWITEF SKSYDDQTLQ NHQPLFHHLI
201: HPFHNNHQLD YLQAPEHLIS DKV
001: MEKVSIVCFF FFLLFGSGYG GLPPFWRATV VTMTNLIGGP PLTIHCKSKQ DDLGIHVVPF KQEYHFKFQP NLWKSTLFFC SFQWDSQFKS FDIYDAQRDQ
101: GICDDCQWEI KPDGPCRLGK KAKCFPWK
101: GICDDCQWEI KPDGPCRLGK KAKCFPWK
Arabidopsis Description
SPH5S-protein homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:O23020]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.