Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86621 | Canola | extracellular | 77.69 | 77.69 |
| CDY09532 | Canola | extracellular | 77.69 | 77.69 |
| CDY69268 | Canola | extracellular | 64.62 | 61.31 |
| CDY53202 | Canola | extracellular | 63.85 | 60.58 |
| AT1G04645.1 | Thale cress | extracellular | 51.54 | 52.34 |
| CDY70276 | Canola | nucleus | 52.31 | 43.87 |
| CDY69473 | Canola | endoplasmic reticulum, extracellular, vacuole | 74.62 | 43.5 |
| CDY22781 | Canola | extracellular | 23.85 | 30.69 |
| CDY07922 | Canola | extracellular | 30.77 | 30.3 |
| CDY52726 | Canola | extracellular | 33.85 | 30.14 |
| CDX70447 | Canola | extracellular | 35.38 | 29.68 |
| CDY42283 | Canola | extracellular | 35.38 | 29.49 |
| CDY69170 | Canola | extracellular | 30.0 | 29.32 |
| CDY22772 | Canola | extracellular | 30.0 | 28.89 |
| CDY28026 | Canola | extracellular | 30.0 | 28.89 |
| CDY44932 | Canola | extracellular | 34.62 | 28.85 |
| CDY34984 | Canola | extracellular | 23.85 | 27.93 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 36.15 | 27.49 |
| CDY42551 | Canola | extracellular | 33.85 | 26.83 |
| CDY22773 | Canola | extracellular | 33.85 | 26.83 |
| CDY09706 | Canola | extracellular | 30.0 | 24.84 |
| CDX90536 | Canola | extracellular | 29.23 | 24.2 |
| CDX70444 | Canola | extracellular | 34.62 | 23.2 |
| CDY22777 | Canola | endoplasmic reticulum, nucleus, plasma membrane, plastid | 30.0 | 22.54 |
| CDY69688 | Canola | extracellular | 21.54 | 15.82 |
| CDY70063 | Canola | plastid | 6.15 | 12.9 |
Protein Annotations
| EnsemblPlants:CDX86618 | EnsemblPlantsGene:GSBRNA2T00145271001 | InterPro:Self-incomp_S1 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF10 | PFAM:PF05938 |
| ProteinID:CDX86618 | ProteinID:CDX86618.1 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EC37F3 | MapMan:35.1 |
Description
BnaC08g00850D
Coordinates
chrLK031846:+:1142345..1142737
Molecular Weight (calculated)
14933.1 Da
IEP (calculated)
9.070
GRAVY (calculated)
-0.142
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNSPKLCVV FLIMVLLFGP SHELAPFWPD TTVTVINNLG GPLLTVHCKS KDDDLGIHIV AANKDYHFSF QPNVWKTTLF FCSFQWNNQV KRFDIFDATR
101: DEGVGEKFNW TIKPNGPCKL GKKVKCFPWK
101: DEGVGEKFNW TIKPNGPCKL GKKVKCFPWK
001: MEKVSIVCFF FFLLFGSGYG GLPPFWRATV VTMTNLIGGP PLTIHCKSKQ DDLGIHVVPF KQEYHFKFQP NLWKSTLFFC SFQWDSQFKS FDIYDAQRDQ
101: GICDDCQWEI KPDGPCRLGK KAKCFPWK
101: GICDDCQWEI KPDGPCRLGK KAKCFPWK
Arabidopsis Description
SPH5S-protein homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:O23020]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.