Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44932 | Canola | extracellular | 96.15 | 96.15 |
| CDX70447 | Canola | extracellular | 63.46 | 63.87 |
| CDX70444 | Canola | extracellular | 55.77 | 44.85 |
| AT5G12060.1 | Thale cress | extracellular | 39.74 | 41.33 |
| AT5G12070.1 | Thale cress | extracellular | 37.82 | 38.82 |
| CDY52726 | Canola | extracellular | 34.62 | 36.99 |
| CDY53202 | Canola | extracellular | 32.05 | 36.5 |
| CDX90536 | Canola | extracellular | 36.54 | 36.31 |
| CDY69268 | Canola | extracellular | 31.41 | 35.77 |
| CDY09706 | Canola | extracellular | 35.9 | 35.67 |
| CDY07922 | Canola | extracellular | 30.13 | 35.61 |
| CDX86618 | Canola | extracellular | 29.49 | 35.38 |
| CDY42551 | Canola | extracellular | 36.54 | 34.76 |
| CDY34984 | Canola | extracellular | 24.36 | 34.23 |
| CDY22773 | Canola | extracellular | 35.9 | 34.15 |
| CDY69170 | Canola | extracellular | 28.85 | 33.83 |
| CDY22772 | Canola | extracellular | 28.85 | 33.33 |
| CDY09532 | Canola | extracellular | 26.92 | 32.31 |
| CDX86621 | Canola | extracellular | 26.92 | 32.31 |
| CDY28026 | Canola | extracellular | 27.56 | 31.85 |
| CDY22781 | Canola | extracellular | 19.87 | 30.69 |
| CDY22777 | Canola | endoplasmic reticulum, nucleus, plasma membrane, plastid | 32.69 | 29.48 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 29.49 | 26.9 |
| CDY70276 | Canola | nucleus | 23.08 | 23.23 |
| CDY69473 | Canola | endoplasmic reticulum, extracellular, vacuole | 28.21 | 19.73 |
| CDY69688 | Canola | extracellular | 18.59 | 16.38 |
| CDY70063 | Canola | plastid | 4.49 | 11.29 |
Protein Annotations
| EnsemblPlants:CDY42283 | EnsemblPlantsGene:GSBRNA2T00074521001 | InterPro:Self-incomp_S1 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF5 | PFAM:PF05938 |
| ProteinID:CDY42283 | ProteinID:CDY42283.1 | SignalP:SignalP-noTM | UniParc:UPI0004EED147 | UniProt:A0A078HZS3 | MapMan:35.1 |
Description
BnaC02g08890DBnaC02g08890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZS3]
Coordinates
chrLK032520:-:90486..90956
Molecular Weight (calculated)
17852.0 Da
IEP (calculated)
7.302
GRAVY (calculated)
-0.346
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKWQVYVVV ISLFVHLAAS RVETIIEGRT GEITNKLFDG IRGRRTVEII NKLGGGLTLT LHCKSKDDDL GVQTLAPDSR WSFKFTPAFF GTTRFSCNFK
101: WGGESHSFDI YDDDRDVGDK QCYLCSWNIY NGSQGGFTCR FQESTGRYDI CYVWNE
101: WGGESHSFDI YDDDRDVGDK QCYLCSWNIY NGSQGGFTCR FQESTGRYDI CYVWNE
001: MKNILKTQVH VVVIYLLIKI AFSQVKTDFD VNWSTSKMVR ITNRLGDGLT LNLHCKSADD DLGLKILAPN GSWSFKFRTS IVGTTLFYCH FTWPGQSKRF
101: DIYDDDRDGV RSHISCINCI WDISIQGPCM FSESDHAFNI CYDWNGNLRT
101: DIYDDDRDGV RSHISCINCI WDISIQGPCM FSESDHAFNI CYDWNGNLRT
Arabidopsis Description
SPH3S-protein homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMQ4]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.