Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G12070.1 | Thale cress | extracellular | 76.0 | 75.0 |
| CDX70447 | Canola | extracellular | 43.33 | 41.94 |
| AT3G17080.1 | Thale cress | extracellular | 37.33 | 41.79 |
| CDY42283 | Canola | extracellular | 41.33 | 39.74 |
| Bra020054.1-P | Field mustard | extracellular | 40.67 | 39.1 |
| CDY44932 | Canola | extracellular | 40.67 | 39.1 |
| AT4G16195.1 | Thale cress | extracellular | 38.67 | 36.02 |
| AT3G16970.1 | Thale cress | cytosol | 32.67 | 35.0 |
| AT4G24973.1 | Thale cress | extracellular | 29.33 | 32.84 |
| AT4G24975.1 | Thale cress | extracellular | 29.33 | 32.59 |
| AT1G04645.1 | Thale cress | extracellular | 26.67 | 31.25 |
| AT4G24974.1 | Thale cress | extracellular | 26.67 | 30.3 |
| CDX70444 | Canola | extracellular | 37.33 | 28.87 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 30.67 | 26.9 |
| AT3G16960.1 | Thale cress | endoplasmic reticulum, extracellular | 16.0 | 21.05 |
Protein Annotations
| MapMan:35.1 | EntrezGene:831079 | UniProt:A0A178UE67 | ProteinID:AED91757.1 | ArrayExpress:AT5G12060 | EnsemblPlantsGene:AT5G12060 |
| RefSeq:AT5G12060 | TAIR:AT5G12060 | RefSeq:AT5G12060-TAIR-G | EnsemblPlants:AT5G12060.1 | TAIR:AT5G12060.1 | ProteinID:BAB10024.1 |
| InterPro:Cupredoxin | EMBL:DQ056678 | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0007154 |
| GO:GO:0008150 | GO:GO:0009856 | GO:GO:0009875 | GO:GO:0009987 | GO:GO:0060320 | InterPro:IPR008972 |
| RefSeq:NP_196767.1 | ProteinID:OAO91544.1 | PFAM:PF05938 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF5 | UniProt:Q9FMQ4 |
| SUPFAM:SSF49503 | InterPro:Self-incomp_S1 | SignalP:SignalP-noTM | UniParc:UPI00000A9855 | : | : |
Description
SPH3S-protein homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMQ4]
Coordinates
chr5:-:3894773..3895393
Molecular Weight (calculated)
17218.6 Da
IEP (calculated)
7.827
GRAVY (calculated)
-0.111
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNILKTQVH VVVIYLLIKI AFSQVKTDFD VNWSTSKMVR ITNRLGDGLT LNLHCKSADD DLGLKILAPN GSWSFKFRTS IVGTTLFYCH FTWPGQSKRF
101: DIYDDDRDGV RSHISCINCI WDISIQGPCM FSESDHAFNI CYDWNGNLRT
101: DIYDDDRDGV RSHISCINCI WDISIQGPCM FSESDHAFNI CYDWNGNLRT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.