Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G24975.1 | Thale cress | extracellular | 78.03 | 76.3 |
| AT4G24973.1 | Thale cress | extracellular | 64.39 | 63.43 |
| AT1G04645.1 | Thale cress | extracellular | 35.61 | 36.72 |
| AT3G16970.1 | Thale cress | cytosol | 32.58 | 30.71 |
| AT3G17080.1 | Thale cress | extracellular | 30.3 | 29.85 |
| AT4G16195.1 | Thale cress | extracellular | 35.61 | 29.19 |
| AT5G12070.1 | Thale cress | extracellular | 32.58 | 28.29 |
| AT5G12060.1 | Thale cress | extracellular | 30.3 | 26.67 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 31.06 | 23.98 |
| AT3G16960.1 | Thale cress | endoplasmic reticulum, extracellular | 15.91 | 18.42 |
| CDY70063 | Canola | plastid | 6.82 | 14.52 |
Protein Annotations
| MapMan:35.1 | EntrezGene:6240447 | ProteinID:AEE84986.1 | EMBL:AL049657 | ArrayExpress:AT4G24974 | EnsemblPlantsGene:AT4G24974 |
| RefSeq:AT4G24974 | TAIR:AT4G24974 | RefSeq:AT4G24974-TAIR-G | EnsemblPlants:AT4G24974.1 | TAIR:AT4G24974.1 | Unigene:At.73316 |
| UniProt:B3H7A6 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0007154 |
| GO:GO:0008150 | GO:GO:0009856 | GO:GO:0009875 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0060320 | RefSeq:NP_001119050.1 | PFAM:PF05938 | PANTHER:PTHR31232 | PANTHER:PTHR31232:SF5 | InterPro:Self-incomp_S1 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001739425 | : | : | : |
Description
SPH19S-protein homolog 19 [Source:UniProtKB/Swiss-Prot;Acc:B3H7A6]
Coordinates
chr4:+:12842850..12843363
Molecular Weight (calculated)
15163.1 Da
IEP (calculated)
6.990
GRAVY (calculated)
-0.068
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSLAFHII MSVTFMVFFF GGLCEARGVN VDLINDIGPN VQLGLHCKSK NKDLGSQSLV SDQHWGFRAS LGFWTVTLFF CHFEWENQSK WFDIFVEDRD
101: LTCGDHCVWS IRPSGPCRLT GREKCFPWNN KY
101: LTCGDHCVWS IRPSGPCRLT GREKCFPWNN KY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.