Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52726 | Canola | extracellular | 63.57 | 60.96 |
| CDY34984 | Canola | extracellular | 45.71 | 57.66 |
| AT3G17080.1 | Thale cress | extracellular | 50.71 | 52.99 |
| AT3G16960.1 | Thale cress | endoplasmic reticulum, extracellular | 31.43 | 38.6 |
| AT4G16195.1 | Thale cress | extracellular | 41.43 | 36.02 |
| AT1G04645.1 | Thale cress | extracellular | 32.86 | 35.94 |
| AT4G24975.1 | Thale cress | extracellular | 33.57 | 34.81 |
| AT5G12070.1 | Thale cress | extracellular | 37.14 | 34.21 |
| AT4G24973.1 | Thale cress | extracellular | 32.14 | 33.58 |
| AT5G12060.1 | Thale cress | extracellular | 35.0 | 32.67 |
| AT4G24974.1 | Thale cress | extracellular | 30.71 | 32.58 |
| VIT_07s0005g05300.t01 | Wine grape | cytosol | 32.14 | 26.32 |
Protein Annotations
| ArrayExpress:AT3G16970 | EnsemblPlants:AT3G16970.1 | EnsemblPlantsGene:AT3G16970 | EntrezGene:820953 | GO:GO:0008150 | InterPro:Self-incomp_S1 |
| PANTHER:PTHR31232 | PANTHER:PTHR31232:SF5 | PFAM:PF05938 | PO:PO:0020030 | ProteinID:AEE75890.1 | RefSeq:AT3G16970 |
| RefSeq:AT3G16970-TAIR-G | RefSeq:NP_188322.1 | TAIR:AT3G16970 | TAIR:AT3G16970.1 | Unigene:At.65097 | UniParc:UPI000016340D |
| UniProt:Q3EB54 | MapMan:35.1 | : | : | : | : |
Description
Plant self-incompatibility protein S1 family [Source:UniProtKB/TrEMBL;Acc:Q3EB54]
Coordinates
chr3:-:5793668..5794090
Molecular Weight (calculated)
16227.2 Da
IEP (calculated)
8.285
GRAVY (calculated)
-0.563
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MCVSVTISRG QKDSIPPTPT SGFDNPRTTV VIYNDLGGHL PLRYHCKSKN DDLGDRNMAV NGTWSFEFRP SVFGGTLFFC GFIWDKELHW FDIYKQSRDR
101: EFAEFGCRRC EWKIRKDGPC KLNKNSNMFD VCLPWNSQSL
101: EFAEFGCRRC EWKIRKDGPC KLNKNSNMFD VCLPWNSQSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.